| Accession |
Title |
Description |
BioSample |
SRA |
| PRJNA173551 |
Lactuca sativa cultivar Salinas (Genome sequencing) |
This project is focused on generating a high quality draft whole genome sequence of Lactuca sativa that is an economically important, representative species of the Compositae family. Cultivar Salinas and its derivatives are some of the most widely grown genotypes worldwide. |
12 |
73 |
| PRJNA238055 |
Cichorium endivia (Genome sequencing) |
Sequencing of the endive genome. |
1 |
2 |
| PRJNA238063 |
Cichorium intybus (Genome sequencing) |
Sequencing of the chicory genome. |
1 |
2 |
| PRJNA238069 |
Cynara cardunculus var. scolymus (Genome sequencing and assembly) |
Sequencing of the cardoon genome. |
4 |
12 |
| PRJNA285243 |
Peronospora tabacina (Genome sequencing and assembly) |
Assembling and analyzing genomic sequences of two Peronospora tabacina strains. |
2 |
5 |
| PRJNA387017 |
Bremia lactucae asexual single spore progeny WGS |
Whole genome sequencing of asexual single spore progeny derived from Bremia lactucae isolates C82P24 and 622b. |
33 |
33 |
| PRJNA387192 |
Bremia lactucae diversity panel WGS |
Whole genome sequencing of diversity panel isolates of Bremia lactucae. |
42 |
32 |
| PRJNA387454 |
Bremia lactucae SF5 x C82P24 progeny WGS |
Whole genome sequencing of progeny generated from parental Bremia lactucae isolates SF5 and C82P24. |
75 |
94 |
| PRJNA387613 |
Bremia lactucae whole genome sequencing and de novo assembly |
Whole genome sequencing and de novo assembly of Bremia lactucae isolates SF5 and C82P24. |
2 |
9 |
| PRJNA412928 |
Lactuca serriola cultivar:UC96US23 Genome sequencing and assembly |
This project focused on generating a high-quality draft whole genome sequence of Lactuca serriola (wild relative of cultivated lettuce). |
4 |
3 |
| PRJNA429829 |
CRISPR-Cas9 knockouts of NCED4 in lettuce |
This work describes a detailed, high resolution analysis of editing events in lettuce. This provides insights into mutational events resulting in stable transformants as a foundation for numerous further editing experiments in lettuce and other species. These editing events of the NCED4 gene are a phenocopy of a naturally occurring allele and result in a phenotype that is observable at the whole plant level with minimal pleotropic consequences. Therefore, editing of NCED4 could be used in a co-editing strategy to enrich for germline editing events. |
431 |
431 |
| PRJNA453556 |
Peronospora effusa whole genome sequencing and assembly |
Whole genome sequencing, de novo assembly and annotation of Peronospora effusa isolates. |
2 |
2 |
| PRJNA478460 |
Lactuca sativa phenotypic variation and genetic diversity |
Whole genome shotgun sequencing of a large collection of lettuce cultivars for studying phenotypic variation and genetic diversity |
88 |
89 |
| PRJNA508811 |
Organellar genomes of cultivated and wild lettuce (Lactuca) varieties |
Mitochondrial and chloroplast genome assemblies of domesticated and wild lettuce species. |
3 |
3 |
| PRJNA510128 |
Lactuca (wild lettuce) phenotypic variation and genetic diversity. |
Whole genome shotgun sequencing of a large collection of wild lettuce accessions for studying phenotypic variation and genetic diversity. |
3 |
3 |
| PRJNA523226 |
RNAseq of lettuce infected with Bremia lactucae |
RNA sequencing study of Bremia lactucae isolate SF5 infecting lettuce cultivar(s). The data was generated under controlled lab conditions and was used for annotation of B. lactucae. |
10 |
27 |
| PRJNA557490 |
Genetic analysis of the major QTL for tipburn resistance in lettuce |
Analysis of lettuce varieties and their crosses for the resistance to tipburn. |
37 |
37
|
| PRJNA634525 |
Bremia lactucae; SF5xC98O622b progeny WGS |
Whole genome sequencing of progeny generated from parental Bremia lactucae isolates SF5 and C98O622b |
23 |
43
|
| PRJNA642889 |
Lactuca genetic analysis of daily floral opening time |
Analysis of an F6 RIL population between Lactuca sativa acc. PI251246 and Lactuca serriola acc. Armenian999 for variation in flowering time related traits |
235 |
245
|
| PRJNA660777 |
Sequencing of California UCB-1 F1 Hybrid Pistachio Rootstock |
Sequencing of UCB-1 pistachio rootstock. UCB-1 is an interspecific F1 hybrid produced by closed pollination between parents of two different Pistacia species: a selected P. atlantica female and a selected P. integerrima male. In commercial orchards, UCB-1 is typically grafted with a nut producing cultivar (scion) of Pistacia vera. |
2966 |
2458
|
| PRJNA661052 |
Sequencing and Assembly of California Pistacia integerrima |
Sequencing and Genome assembly of Pistacia integerrima. Pistacia integerrima, also known as crabs claw or zebrawood, is a species of pistachio tree. After P. integerrima was discovered to be tolerant of Verticillium Wilt, it became commonly used as a rootstock in California. P. integerrima is also used as the male parent in the production of UCB-1 interspecific hybrid rootstock (P. atlantica x P. integerrima). |
10 |
9
|
| PRJNA661055 |
Sequencing and Assembly of California Pistacia atlantica |
Sequencing and Genome Assembly of Pistacia atlantica. Pistacia atlantica, also known as the Mt. Atlas Mastic Tree or Persian Turpentine Tree, is a species of pistachio tree. Before P. integerrima was discovered to be tolerant of Verticillium Wilt, P. atlantica was the most common rootstock in California pistachio orchards. Pistacia atlantica is used as the female parent in the production of UCB-1 interspecific hybrid rootstock (P. atlantica x P. integerrima). |
15 |
14
|
| PRJNA745455 |
Peronospora effusa whole genome sequencing and assembly with long reads |
Whole genome sequencing, de novo assembly and annotation of Peronospora effusa isolates using long reads |
1 |
1
|
| PRJNA845776 |
Peronosclerospora sorghi whole genome sequencing and assembly |
Whole genome sequencing and de novo assembly of Peronosclerospora sorghi isolates |
1 |
3
|
