Publications

2021-now 2016-2020 2011-2015 2006-2010 2001-2005 1991-2000 1980-1990

Bull T, Debernardi J, Reeves M, Hill T, Bertier L, VanDeynze A, Michelmore RW. (2023). GRF-GIF chimeric proteins enhance in vitro regeneration and Agrobacterium-mediated transformation efficiencies of lettuce (Lactuca spp.). Plant Cell Reports. Link.

Davis JT, Li R, Kim S, Michelmore R, Kim S, Maloof JN. (2023). Whole genome sequence of synthetically derived Brassica napus inbred cultivar Da-Ae. G3. Link.

Fletcher K, Isakeit T, Cavanaugh K, Magill C, Michelmore R. (2023). The genome of the oomycete Peronsclerospora sorghi, a cosmopolitan pathogen of maize and sorghum, is inflated with dispersed pseudogenes. G3. Link.

Palmer W, Jacygrad E, Sagayaradj S, Cavanaugh K, Han R, Bertier L, Beede B, Kafkas S, Golio D, Preece J, Michelmore R. (2023). Genome assembly and association tests identify interacting loci associated with vigor, precocity, and sex in interspecific pistachio rootstocks. G3. Link.

Nur M, Wood K, Michelmore R. (2023). EffectorO: motif-independent prediction of effectors in oomycete genomes using machine learning and lineage-specificity. MPMI. Link.

2022

Acharya CB, Schrom J, Mitchell AM, Coil DA, Marquez C, Rojas S, Wang CY, Liu J, Pilarowski G, Solis L, Georgian E, Petersen M, DeRisi J, Michelmore R, Havlir D. (2022). Viral load among vaccinated and unvaccinated, asymptomatic and symptomatic persons infected with SARS-CoV-2 Delta Variant. Open Forum Infectious Disease. Link.

An G, Yu C, Yan C, Wang M, Zhang W, Jia Y, Shi C, Larkin R, Chen J, Levelle D, Michelmore R, Kuang H. (2022). The loss-of-function of Lssaw1 alters the expression of leaf dorsiventrality genes to promote leafy heads in lettuce. Plant Cell. Link.

Bull T, Michelmore RW. (2022). Molecular determinants of in vitro plant regeneration: prospects for enhanced manipulation of lettuce (Lactuca sativa L.). Frontiers Pl. Biol. Link.

Crouch J, Davis WJ, Shishkoff N, Castroagudin VL, Martin F, Michelmore R, Thines M. (2022). Peronosporaceae species causing downy mildew diseases of Poaceae, including nomenclature revisions and diagnostic resources. Fungal Systematics & Evolution. Link.

Fletcher K, Han R, Smilde D, Michelmore R. (2022). Variance of allele balance calculated from low coverage sequencing data infers departure from a diploid state. BMC Bioinformatics 23: 150. Link.

Fletcher K, Shin OH, Clark KJ, Feng C, Putman A, Correll J, Klosterman S, Van Deynze A, Michelmore RW. (2022). Ancestral chromosomes for the Peronosporaceae inferred from a telomere-to-telomere genome assembly of Peronospora effusa. Molecular Plant-Microbe Interactions. Link.

Jacygrad E, Kelly M, Hogan S, Preece JE, Golino D, Michelmore R. (2022). Comparison between field measured and UAV-derived pistachio tree crown characteristics throughout a growing season. MDPI Drones. Link.

Kafkas S, Ma X, Zhang X, Topcu H, Navajas-Perez R, Wai CM, Tang H, Xu X, Khodaeiaminjan, Guney M, Paizila A, Karci H, Zhang X, Lin J, de la Herran R, et al. (2022). The pistachio genomes provide insights into nut tree domestication and ZW sex chromosome evolution. Plant Communications. Link.

Palmer W, Jacygrad E, Sagayaradj S, Cavanaugh K, Han R, Bertier L. (2022). Genome assembly and association tests identify interacting loci associated with vigor, precocity, and sex in interspecific pistachio rootstocks. G3. Link.

Pink H, Talbot A, Graceson A, Graham J, Higgins G, Taylor A, Jackson A, Truco M, Michelmore R, Yao C, Gawthrop F, Pink D, Hand P, Clarkson J, Denby K. (2022). Identification of genetic loci in lettuce mediating quantitative resistance to fungal pathogens. Theor. Appl. Genet. Link.

Xiong W, Berke L, Michelmore R, van Workum DJ M, Becker FFM, Schijlen E, Bakker LV, Peters S, van Treuren R, Jeuken M, Bouwmeester K, Schranz EM. (2022). The genome of Lactuca saligna, a wild relative of lettuce, provides insights into non-host resistance to the downy mildew Bremia lactucae. The Plant Journal.

2021

An G, Simko I, Chen J, Yu C, Lavelle D, Zhang W, Michelmore R, Kuang H. (2021). Hypersensitivity to triforine in lettuce is triggered by a TNL gene through the disease resistance pathway. Plant Biotech. J. 19: 2144-2146. Link.

Damerum A, Smith HK, Clarkson GJJ, Truco MJ, Michelmore RW, Taylor G. (2021). The genetic basis of water use and yield in lettuce. BMC Plant Biol. 21: 237. Link.

Gurdon C, Tao R, Kozik A, Poulev A, Armas I, Michelmore RW, Raskin I. (2021). Isolation of an active CACTA transposon and its inactive derivative from lettuce anthocyanin biosynthesis mutants and the characterization of the LsC1 transposon family in lettuce. Plant Physiology 186: 929-944. Link.

Han R, Lavelle D, Truco MJ, Michelmore RW. (2021). Quantitative trait loci and candidate genes associated with photoperiod sensitivity in lettuce (Lactuca spp.). Theor. Appl. Genet. 134: 3473-3487. Link.

Han R, Truco MJ, Lavelle DO, Michelmore RW. (2021) A composite analysis of flowering time regulation in lettuce. Frontiers in Plant Science. Link.

Han R, Wong AJY, Tang Z, Truco MJ, Lavelle DO, Kozik A, Jin Y, Michelmore RW. (2021) Drone phenotyping and machine learning enable discovery of loci regulating daily floral opening in lettuce. Journal of Experimental Botany, 2021 72(8): 2979-2994. Link.

Fletcher K, Zhang L, Gil J, Han R, Cavanaugh K, Michelmore R. (2021) AFLAP: assembly-free linkage analysis pipeline using k-mers from genome sequencing data. Genome Biology. Link.

Jelenska J, Lee J, Manning AJ, Wolfgeher DJ, Ahn Y, Walters-Marrah G, Lopez IE, Garcia L, McClerklin SA, Michelmore RW, Kron SJ, Greenberg JT. (2021). Pseudomonas syringae effector HopZ3 suppresses the bacterial AvrPto-tomato PTO immune complex via acetylation. PLOS Pathogens 17: e1010017. Link.

Lien J, Bull T, Bertier L, Michelmore RW, Guo T. (2021). Fast fluorescent titration quantification of plasmid DNA with DNA attractive magnetic nanoparticles. Analytical Chemistry 93: 12854-12861. Link.

Macias-Gonzalez M, Truco MJ, Han R, Jenni S, Michelmore RW. (2021) High resolution genetic dissection of the major QTL for tipburn resistance in lettuce, Lactuca sativa. G3. Link.

Parra L, Simko I, Michelmore RW. (2021) Identification of major quantitative trait loci controlling field resistance to downy mildew in cultivated lettuce (Lactuca sativa). Phytopathology. Link.

Sandoya G, Truco MJ, Bertier LD, Subbarao KV, Simko I, Hayes RJ, Michelmore RW. (2021) Genetics of partial resistance against Verticillium dahliae race 2 in wild and cultivated lettuce. Phytopathology 2021. Link.

2020

Jacygrad E, Preece JE, Palmer WJ, Michelmore RW, Golino D. (2020). Phenotypic segregation of seedling UCB-1 hybrid pistachio rootstock. Trees 34: 531-541. Link.

Lal NK, Thanasuwat B, Huang PJ, Cavanaugh KA, Carter A, Michelmore RW, Dinesh-Kumar SP. (2020) Phytopathogen effectors use multiple mechanisms to manipulate plant autophagy. Cell Host & Microbe 28: 558-571. Link.

Macias-Gonzalez M, Truco MJ, Smith R, Cahn M, Simko I, Hayes R, Michelmore RW. (2020) Genetics of robustness under nitrogen- and water-deficient conditions in field-grown lettuce. Crop Science. Link.

Parra L, Nortman K, Sah A, Truco MJ, Ochoa O, Michelmore R. (2020) Identification and mapping of new genes for resistance to downy mildew in lettuce. TAG 134: 519-528. Link.

Peng H, Sthapit Kandel J, Michelmore RW, Simko I. (2020). Identification of factors affecting the deterioration rate of fresh-cut lettuce in modified atmosphere packaging. Food and Bioprocess Technology 13: 1997-2011. Link.

Su W, Tao R, Liu W, Yu C, Yue Z, He S, Lavelle D, Zhang W, Zhang L, An G, Zhang Y, Qun Hu W, Larkin RM, Michelmore RW, Kuang H, Chen J. (2020). Characterization of five polymorphic genes controlling red leaf color in lettuce that have undergone disruptive selection since domestication. Plant Biotechnol. J. 18: 479-490. Link.

Wood K, Nur M, Gil J, Fletcher K, Lakeman K, Gann D, Gothberg A, Khuu T, Kopetzky J, Naqvi S, Pandya A, Zhang C, Maisonneuve B, Pel M, Michelmore R. (2020) Effector prediction and characterization in the oomycete pathogen Bremia lactucae reveal host-recognized WY domain proteins that lack the canonical RXLR motif. PLOS Pathogens. Link.

Yu C, Yan C, Liu Y, Liu Y, Jia Y, Lavelle D, An G, Zhang W, Zhang L, Han R, Larkin RM, Chen J, Michelmore RW, Kuang H. (2020). Upregulation of KN1 homolog by transposon insertion promotes leafy head development in lettuce. PNAS 117: 33668-33678. Link.

Zhang Y, Fletcher K, Han R, Michelmore R, Yang R. (2020). Genome-wide analysis of cyclophilin proteins in 21 oomycetes. MDPI Pathogens 9: 24. Link.

2019

Bertioli DJ, Jenkins J, Clevenger J, et al. (2019). The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics 51: 877-884. Link.

Fletcher K, Gil J, Bertier LD, Kenefick A, Wood KJ, Zhang L, Reyes-Chin-Wo S, Cavanaugh K, Tsuchida C, Wong J, Michelmore R. (2019) Genomic signatures of heterokaryosis in the oomycete pathogen Bremia lactucae. Nat Commun. 2019 Jun 14;10(1):2645. Link.

Inderbitzin P, Christopoulou M, Lavelle D, Reyes-Chin-Wo S, Michelmore RW, Subbarao KV, Simko I. (2019) The LsVe1L allele provides a molecular marker for resistance to Verticillium dahliae race 1 in lettuce. BMC Plant Biol. 2019 19(1):305. Link.

Kozik, A., Rowan, B.A., Lavelle, D., Berke, L., Schranz, M.E., Michelmore, R.W., Christensen, A.C. (2019) The alternative reality of plant mitochondrial DNA: One ring does not rule them all.PL PLoS Genet. 2019 Aug 30;15(8):e1008373. doi: 10.1371/journal.pgen.1008373. Link.

Macias-Gonzalez M, Truco MJ, Bertier LD, Jenni S, Simko I, Hayes RJ, Michelmore RW. (2019) Genetic architecture of tipburn resistance in lettuce. Theor Appl Genet. 2019 132(8):2209-2222. Link.

Mamo BE, Hayes RJ, Truco MJ, Puri KD, Michelmore RW, Subbarao KV, Simko I. (2019) The genetics of resistance to lettuce drop (Sclerotinia spp.) in lettuce in a recombinant inbred line population from Reine des Glaces x Eruption. Theor Appl Genet. 2019 132(8):2439-2460. Link.

Sandoya, G., Maisonneuve, B., Truco, M.J., Bull, C.T., Simko, I., Trent, M., Hayes, R.J., Michelmore, R.W. (2019) Genetic analysis of resistance to bacterial leaf spot in the heirloom lettuce cultivar Reine des Glaces. Molecular Breeding. 2019 39. Link.

Su W, Tao R, Liu W, Yu C, Yue Z, He S, Lavelle D, Zhang W, Zhang L, An G, Zhang Y, Hu Q, Larkin RM, Michelmore RW, Kuang H, Chen J. (2019) Characterization of four polymorphic genes controlling red leaf color in lettuce that have undergone disruptive selection since domestication. Plant Biotechnol J. 2019 Jul 20. Link.

Sun, H., Rowan, B., Flood, P.J., Brandt, R., Fuss, J., Hancock, A.M., Michelmore, R.W., Huettel, B., Schneeberger, K. (2019) Linked-read sequencing of gametes allows efficient genome-wide analysis of meiotic recombination. Nat Commun. 2019 Sep 20;10(1):4310. doi: 10.1038/s41467-019-12209-2. Link.

Zhang, Y., Fletcher, K., Han, R., Michelmore, R. Yang, R. (2019) Genome-Wide Analysis of Cyclophilin Proteins in 21 Oomycetes. Pathogens. 2019 Dec 26;9(1). pii: E24. Link.

2018

Bertier LD, Ron M, Huo H, Britt A, Bradford KJ, Michelmore RW. (2018). High-resolution analysis of the efficiency, heritability, and editing outcomes of CRISPR/CAS9-induced modifications of NCED4 in lettuce (Lactuca sativa). G3 8:1513-1521. Link.

Fletcher K, Klosterman SJ, Derevnina L, Martin F, Bertier LD, Koike S, Reyes-Chin-Wo S, Mou B, Michelmore R. (2018) Comparative genomics of downy mildews reveals potential adaptations to biotrophy. BMC Genomics. 2018 Nov 29;19(1):851. Link.

Fletcher , K. Michelmore, R. (2018) From Short Reads to Chromosome-Scale Genome Assemblies. Methods Mol. Biol. 2018 1848:151-197. Link.

Kitazaki, K., Fukushima, A., Nakabayashi, R., Okazaki, Y., M., Mori, T., Nishizawa, T., Reyes-Chin-Wo, S., Michelmore, R.W., Saito, K., Shoji, K., Kusano, M. (2018) Metabolic Reprogramming in Leaf Lettuce Grown Under Different Light Quality and Intensity Conditions Using Narrow-Band LEDs Scientific Repts. 2018 8:7914. Link.

Li, R., Jeong, K., Davis, J.T., Kim, S., Lee, S., Michelmore, R.W., Kim, S., Maloof, J.M. (2018) Integrated QTL and eQTL mapping provides insights and candidate genes for fatty acid composition, flowering time, and growth traits in a F2 population of a novel synthetic allopolyploid Brassica napus. Frontiers in Pl. Sci. 2018 Nov 13;9:1632. Link.

Simko, I., Hayes, R.J., Truco, M.J., Michelmore, R.W., Antonise, R., Massoudi, M. (2018) Molecular markers reliably predict post-harvest decay of fresh-cut lettuce in modified atmosphere packaging. Hort. Res. 2018 Apr 1;5:21. Link.

Wroblewski T., Spiridon, L., Martin, E.C., Petrescu, A.-J., Cavanaugh, K., Truco, M.-J., Xu, H., Gozdowski, D.,, Pawlowski, K., Michelmore, R.W., Takken, F.L.W. (2018) Genome-wide functional analyzes of plant CC-NB-LRR pathogen receptors reveal essential roles of their N-terminal domain in oligomerization, networking and immunity. PLoS Biology 2018 Dec 12;16(12):e2005821. Link.

2017

Choi Y-J, Wong J, Runge F, Mishra B, Michelmore R, Thines M. (2017). BrRxLR11 - a new phylogenetic marker with high resolution in the downy mildew genus Bremia and related genera. Mycol. Progress 16: 185-190. Link.

Michelmore, R.W., Coaker, G. et 38 al. (2017) Foundational and translational research opportunities to improve plant health. Molec. Plant-Microbe Interact. 2017 30:515-516. Link.

Michelmore, R.W. (2017) Applications of biotechnology and genomics to disease resistance in lettuce. In: Compendium of Lettuce Diseases and Pests, Second Edition. K. V. Subbarao, ed. APS Press. 2017 pp 9 - 13.

Reyes-Chin-Wo, S., Wang, Z., Yang, X., Kozik, A., Arikit, S., Song, C., Xia, L., Froenicke, L., Lavelle, D.O., Truco, M-J., Xia, R., Zhu, S., Xu, C., Xu, H., Xu, X., Cox, K., Korf, I., Meyers, B.C., Michelmore, R.W. (2017) Genome assembly with in vitro proximity ligation data and whole genome triplication in lettuce. Nature Comm. 2017 8:14953. Link.

Sandoya GV, Gurung S, Short DP, Subbarao KV, Michelmore RW, Hayes RW. (2017) Genetics of resistance in lettuce to races 1 and 2 of Verticillium dahliae from different host species Euphytica 2017 213:20. Link.

Zhang, I., Zhang, W., Chen, J., Wu, P., Tao, R., Jia, Y., Larkin, R.M., Lavelle, D., Michelmore, R.W., Kuang, H. (2017) RNA sequencing provides insights into the evolution of lettuce and the regulation of flavonoid biosynthesis. Nature Comm. 2017 8:2264-2276. Link.

2016

Bertioli, D J and Cannon, S B and Froenicke, L and Huang, G and Farmer, A D and Cannon, E K S and Liu, X and Gao, D and Clevenger, J and Dash, S and Ren, L and Moretzsohn, M C and Shirasawa, K and Huang, W and Vidigal, B and Abernathy, B and Chu, Y and Nie (2016) The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nat Genet 2016 Apr;48(4):438-46. Link.

Chadwick M, Gawthrop F, Michelmore RW, Wagstaff C, Methven L. (2016) Perception of bitterness, sweetness and liking of different genotypes of lettuce. Food Chem. 2016 Apr 15;197(Pt A):66-74. Link.

Kunjeti SG, Anchieta A, Martin FN, Choi YJ, Thines M, Michelmore RW, Koike ST, Tsuchida C, Mahaffee W, Subbarao KV, Klosterman SJ. (2016) Detection and Quantification of Bremia lactucae by Spore Trapping and Quantitative PCR. Phytopathology 2016 Nov;106(11):1426-1437. Link.

Parra L, Maisonneuve B, Schut J, Christopoulou M, Jeuken M, McHale L, Truco M-J, Crute I, Michelmore R (2016) Rationalization of genes for resistance to Bremia lactucae in lettuce Euphytica 2016 210: 309-326. Link.

Scaglione D, Reyes-Chin-Wo S, Acquadro A, Froenicke L, Portis E, Beitel C, Tirone M, Mauro R, Lo Monaco A, Mauromicale G, Faccioli P, Cattivelli L, Rieseberg L, Michelmore R, Lanteri S. (2016) The genome sequence of the outbreeding globe artichoke constructed de novo incorporating a phase-aware low-pass sequencing strategy of F1 progeny. Sci Rep. 2016 Jan 20;6:19427. Link.

Scaglione D, Reyes-Chin-Wo S, Acquadro A, Froenicke L, Portis E, Beitel C, Tirone M, Mauro R, Lo Monaco A, Mauromicale G, Faccioli P, Cattivelli L, Rieseberg L, Michelmore R, Lanteri S. (2016) Corrigendum: The genome sequence of the outbreeding globe artichoke constructed de novo incorporating a phase-aware low-pass sequencing strategy of F1 progeny. Sci Rep. 2016 May 23;6:25323. Link.

Yoong FY, O'Brien LK, Truco MJ, Huo H, Sideman R, Hayes R, Michelmore RW, Bradford KJ. (2016) Genetic Variation for Thermotolerance in Lettuce Seed Germination Is Associated with Temperature-Sensitive Regulation of ETHYLENE RESPONSE FACTOR1 (ERF1). Plant Physiol. 2016 Jan;170(1):472-88. Link.

2015

Christopoulou M, McHale L, Kozik A, Reyes-Chin Wo S, Wroblewski T, Michelmore RW. (2015) Dissection of Two Complex Clusters of Resistance Genes in Lettuce (Lactuca sativa) Mol Plant Microbe Interact. 2015 Feb 4. Link.

Christopoulou M, Wo SR, Kozik A, McHale LK, Truco MJ, Wroblewski T, Michelmore RW. (2015) Genome-Wide Architecture of Disease Resistance Genes in Lettuce G3 (Bethesda) 2015 Oct 8;5(12):2655-69. Link.

Derevnina L, Chin-Wo-Reyes S, Martin F, Wood K, Froenicke L, Spring O, Michelmore R. (2015) Genome Sequence and Architecture of the Tobacco Downy Mildew Pathogen Peronospora tabacina. Mol Plant Microbe Interact. 2015 Nov;28(11):1198-215. Link.

Derevnina L, Michelmore RW. (2015) Wheat rusts never sleep but neither do sequencers: will pathogenomics transform the way plant diseases are managed? Genome Biol. 2015 Mar 2;16:44. Link.

Hill T, Ashrafi H, Reyes Chin-Wo S, Stoffel K, Truco M-J, Kozik A, Michelmore R, Van Deynze A. (2015). Ultra-high density, transcript-based genetic maps of pepper define recombination in the genomes and synteny among related species. G3 5: 2341-2355. Link.

Lee J, Manning AJ, Wolfgeher D, Jelenska J, Cavanaugh KA, Xu H, Fernandez SM, Michelmore RW, Kron SJ, Greenberg JT. (2015) Acetylation of an NB-LRR Plant Immune-Effector Complex Suppresses Immunity. Cell Rep. 2015 Nov 24;13(8):1670-82. Link.

Simko I, Ochoa O, Pel MA, Tsuchida C, Font I Forcada C, Hayes RJ, Truco MJ, Antonise R, Galeano CH, Michelmore R. (2015) Resistance to downy mildew in lettuce cv. La Brillante is conferred by Dm50 gene and multiple QTLs. Phytopathology. 2015 Apr 27. Link.

2014

Beharav A, Ochoa O, Michelmore R. (2014) Resistance in natural populations of three wild Lactuca species from Israel to highly virulent Californian isolates of Bremia lactucae Genetic Resources and Crop Evolution 2014 Vol 61, Issue 3. Link.

Beitel CW, Froenicke L, Lang JM, Korf IF, Michelmore RW, Eisen JA, Darling AE. (2014) Strain- and plasmid-level deconvolution of a synthetic metagenome by sequencing proximity ligation products. PeerJ. 2014 May 27;2:e415. Link.

Govindarajulu M, Epstein L, Wroblewski T, Michelmore RW. (2014) Host-induced gene silencing inhibits the biotrophic pathogen causing downy mildew of lettuce. Plant Biotechnol J. 2014 Dec 9. Link.

Hartman Y, Hooftman DAP, Uwimana B, Schranz ME, van de Wiel CM, Smulders MJM, Visser RGF, Michelmore RW, van Tienderen PH. (2014). Abiotic stress QTLs in lettuce crop-wild hybrids: comparing greenhouse and field experiments. Ecol. & Evol. 4: 2395-2409. Link.

Hayes RJ, Trent MA, Truco M-J, Michelmore RW, Bull CT. (2014). The inheritance of resistance to bacterial leaf spot of lettuce caused by Xanthomonas campestris pv. vitans in three lettuce cultivars. Hort. Res. 1: 14066. Link.

Hodgins KA, Lai Z, Oliveira LO, Still DW, Scascitelli M, Barker MS, Kane NC, Dempewolf H, Kozik A, Kesseli RV, Burke JM, Michelmore RW, Rieseberg LH. (2014) Genomics of Compositae crops: reference transcriptome assemblies and evidence of hybridization with wild relatives Mol Ecol Resour. 2014 Jan;14(1):166-77. Link.

Mandel JR, Dikow RB, Funk VA, Masalia RR, Staton SE, Kozik A, Michelmore RW, Rieseberg LH, Burke JM4. (2014) A target enrichment method for gathering phylogenetic information from hundreds of loci: An example from the Compositae. Appl Plant Sci. 2014 Feb 6;2(2). Link.

Pearl SA, Bowers JE, Reyes-Chin-Wo S, Michelmore RW, Burke JM1. (2014) Genetic analysis of safflower domestication. BMC Plant Biol. 2014 Feb 6;14:43. Link.

Perez-Quintero AL, Munoz-Bodnar A, Gomez F, Gil J, Michelmore R, Szurek B, Bernal A, Lopez C. (2014). Transcriptomic responses in cassava to pathogenic and non-pathogenic strains of Xanthomonas axonopodis pv. manihotis are similar and a candidate target gene of TAL1Xam is a transcriptional repressor. Plant Cell Rep. 33: 1901-1912. Link.

van Bruggen AHC, Ochoa O, Francis IM, Michelmore RW. (2014). Differential interactions between strains of Rhizorphapis, Sphingobium, Sphingopyxis or Rhizorhabdus and accessions of Lactuca spp. result in differences in severity of corky root disease. Plant Pathol. 63: 1053-1061. Link.

Wei Z, Julkowski MM, Laloe J-O, Hartman Y, de Boer G-J, Michelmore RW, van Tienderen P, Testerink CS, Schranz ME. (2014). A mixed model QTL analysis for salt tolerance in crop-wild hybrids of lettuce seedlings. Mol. Breeding 34: 1389-1400. Link

Wroblewski T, Matvienko M, Piskurewicz U, Xu H, Martineau B, Wong J, Govindarajulu M, Kozik A, Michelmore RW. (2014) Distinctive profiles of small RNA couple inverted repeat-induced post-transcriptional gene silencing with endogenous RNA silencing pathways in Arabidopsis. RNA. 2014 Dec;20(12):1987-99. Link.

2013

Atkinson LD, McHale LK, Truco M-J, Hilton HW, Lynn J, Schut JW, Michelmore RW, Hand P, Pink DAC. (2013) An intra-specific linkage map of lettuce (Lactuca sativa) and genetic analysis of postharvest discolouration traits. Theor. Appl. Genet. 126: 2737-2752. Link.

De Cremer K, Mathys J, Vos C, Froenicke L, Michelmore RW, Cammue BP, De Coninck B. (2013) RNAseq-based transcriptome analysis of Lactuca sativa infected by the fungal necrotroph Botrytis cinerea. Plant Cell Environ. 2013 Nov;36(11):1992-2007. Link.

Hill T, Ashrafi H, Reyes-Chin-Wo S, Yao J, Stoffel K, Truco M-J, Kozik A, Michelmore RW, VanDeynze A. (2013) Characterization of Capsicum annuum genetic diversity and population structure based on parallel polymorphism discovery with a 30K unigene pepper GeneChip. PLoS One 8: e56200. Link.

Jenni S, Truco MJ, Michelmore RW. (2013) Quantitative trait loci associated with tipburn, heat stress-induced physiological disorders, and maturity traits in crisphead lettuce. Theor Appl Genet 2013 Sep 28. Link.

Matvienko M, Kozik A, Froenicke L, Lavelle D, Martineau B, Perroud B, Michelmore R. (2013) Consequences of normalizing transcriptomic and genomic libraries of plant genomes using a duplex-specific nuclease and tetramethylammonium chloride. PLoS One. 2013 8(2), e55913. Link.

Michelmore RW, Christopoulou M, Caldwell KS. (2013) Impacts of resistance gene genetics, function, and evolution on a durable future. Annu Rev Phytopathol. 2013 May 15. Link.

Nandety RS, Caplan JL, Cavanaugh K, Perroud B, Michelmore RW, Meyers BC. (2013) The role of TIR-NBS and TIR-X domains in plant basal defense responses. Plant Phys. 162: 1459-1472. Link.

Simko I, Atallah AJ, Ochoa OE, Antonise R, Galeano CH, Truco MJ, Michelmore RW. (2013) Identification of QTLs conferring resistance to downy mildew in legacy cultivars of lettuce. Sci Rep. 2013 Oct 7;3:2875. Link.

Truco, M. J., Ashrafi, H., Kozik, A., van Leeuwen, H., Bowers, J., Wo, S. R. C., Stoffel, K., Xu, H., Hill, T., Deynze, A. V., & Michelmore, R. W. (2013) An Ultra High-Density, Transcript-Based, Genetic Map of Lettuce G3: Genes| Genomes| Genetics. Link.

2012

Ashrafi, H., Hill, T., Stoffel, K., Kozik, A., Yao, J., Chin-Wo, S. R., & Van Deynze, A. (2012) De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes. BMC genomics 2012 13(1), 571. Link.

Bachlava, E., Taylor, C. A., Tang, S., Bowers, J. E., Mandel, J. R., Burke, J. M., & Knapp, S. J. (2012) SNP discovery and development of a high-density genotyping array for sunflower. PLoS One 7(1):e29814. Link.

Lai, Z., Kane, N.C., Kozik, A., Hodgins, K.A., Dlugosch, K.M., Barker, M.S., Matvienko, M., Yu, Q., Pearl, S.A., Bell, G.D.M., Turner, K.G., Zou, Y., Guggisberg, A., Adams, K.L., Anderson, J.V., Horvath, D.P., Kesseli, R.V., Burke, J.M., Michelmore, R.W. (2012) Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression. Am. J. Bot. 2012 99: 209-218. Link.

Lee, J., Teitzel, G.M., Martin, G.B., Michelmore, R.W., Greenberg, J.T. (2012) A role for type III effectors in the growth of Pseudomonas syringae on leaf surfaces. Plant Physiol. 2012 158:1803-18. Link.

Michelmore RW (2012) Genetic mapping. McGraw Hill Encyclopedia of Science & Technology, 11th edition, Stefan Malmoli ed. pp 850-854.

Moody ML, Rieseberg LH. (2012) Sorting through the chaff, nDNA gene trees for phylogenetic inference and hybrid identification of annual sunflowers (Helianthus sect. Helianthus). Mol Phylogenet Evol. 2012 Jul; 64(1):145-55. Link.

Pandey, M.K., Monyo, E., Ozias-Akins, P., Liang, X., Guimares, P., Nigam, S.N., Upadhyaya, H.D., Janila, P., Zhang, X., Guo, B., Cook, D.R., Bertioli, D.J., Michelmore, R., Varshney, R.K. (2012) Advances in Arachis genomics for peanut improvement. Biotechnology Advances. 2012 30:639-651. Link.

Stoffel, K., van Leeuwen, H., Kozik, A., Caldwell, D., Ashrafi, H., Cui, X., Tan, X., Hill, Reyes Chin-Wo, M.J., Truco, Michelmore, R.W., Van Deynze, A. (2012) Development and application of a 6.6 Million Feature Affymetrix GeneChipt (R) for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.). BMC Genomics. 2012 13:185. doi: 10.1186/1471-2164-13-185. Link.

Uwimana, B., Smulders, M.J.M., Hooftman, D.A.P., Hartman, Y., Jansen, J., McHale, L.K., Michelmore, R.W., Visser, R.G.F., van de Wiel, C.C.M. (2012) Crop to wild introgression in lettuce: following the fate of crop genome segments in backcross populations. BMC Pl. Biol. 2012 12:43. Link.

Uwimana, B., Smulders, M.J.M., Hooftman, D.A.P., Jansen, H., McHale, L., Michelmore, R.W., Visser, R.G.F., van de Wiel, C.C.M. (2012) Hybridization between crops and their wild relatives: the contribution of cultivated lettuce (Lactuca sativa L.) to the vigour of crop-wild hybrids under drought, salinity and nutrient deficiency conditions. Theor. Appl. Genet. 2012 125:1097?1111. DOI 10.1007/s00122-012-1897-4

2011

Argyris J, Truco MJ, Ochoa O, McHale L, Dahal P, Van Deynze A, Michelmore RW, Bradford KJ. (2011) A gene encoding an abscisic acid biosynthetic enzyme (LsNCED4) collocates with the high temperature germination locus Htg6.1 in lettuce (Lactuca sp.). Theor Appl Genet. 2011 122(1):95-108. Link.

Cantu, D., Govindarajulu, M., Kozik, A., Wang, M., Chen, X., Michelmore, R.W., Dubcovsky, J. (2011) Next generation sequencing provides rapid access to the genome of Puccinia striiformis f. sp. tritici, the causal agent of wheat stripe rust. Plos One 2011 6:e24230. Link.

Hayes, R.J., McHale, L.K., Vallad, G.E., Truco, M-J., Michelmore, R.W., Klosterman, S.J., Maruthachalam, K., Krishna V. Subbarao, K.V. (2011) The inheritance of resistance to Verticillium wilt caused by race 1 isolates of Verticillium dahliae in the lettuce cultivar La Brillante. Theor. Appl. Genet. Link.

Simko, I., Hayes, R.J., Truco, M.-J., Michelmore, R.W. (2011) Mapping a dominant negative mutation for triforine sensitivity in lettuce and its use as a selectable marker for detecting hybrids. Euphytica 2011 182:157-166. doi:10.1007/s10681-011-0407-0. Link.

Strasburg JL, Kane NC, Raduski AR, Bonin A, Michelmore RW, Rieseberg LH. (2011) Effective population size and rates of adaptive divergence among annual sunflower species. Mol. Biol. Evol. 28: 1569-80. Link.

Tomich, T.P., Brodt, S., Ferris, H., Galt, R., Horwath, W.R., Kebreab, E., Leveau, Liptzin, D., Lubell, M., Merel, P., Michelmore, R., Rosenstock, T., Scow, K., Six, J., Williams, N., Yang, L. (2011) Agroecology: A Review from a Global-Change Perspective. Annu. Rev. Environment Resources 2011 36:193-222. Link.

2010

Argyris J, Truco M-J, Ochoa O, McHale L, Dahal P, Van Deynze A, Michelmore RW, Bradford KJ. (2010) A gene encoding an abscisic acid biosynthetic enzyme (LsNCED4) collocates with the high temperature germination locus Htg6.1 in lettuce (Lactuca sp.). Theor. Appl. Genet. 122: 95-108. Link.

Cantu D, Vanzetti LS, Sumner A, Dubcovsky M, Matvienko M, Distelfeld A, Michelmore RW, Dubcovsky J. (2010) Small RNAs, DNA methylation and transposable elements in wheat. BMC Genomics. 2010 11:408. Link.

Cui X, You N, Girke T, Michelmore R, Van Deynze A. (2010) Single feature polymorphism detection using recombinant inbred line microarray expression data. Bioinformatics. 2010 26(16):1983-9. Link.

Simko, I., Pechenick, D.A., McHale, L.K., Truco, M.J., Ochoa, O.E., Michelmore, R.W., Scheffler, B.E. (2010) Development of molecular markers for marker-assisted selection of dieback disease resistance in lettuce (Lactuca sativa). Acta Horticulturae. 2010 859:401-408.

2009

Caldwell KS, Michelmore RW. (2009) Arabidopsis thaliana Genes Encoding Defense Signaling and Recognition Proteins Exhibit Contrasting Evolutionary Dynamics. Genetics. 2009 Feb;181(2):671-84. Link.

Ferrante, P., Clarke, C., Cavanaugh, K., Michelmore, R.W., Buonaurio, R., Vinatzer, B.A. (2009) Contributions of the effector gene hopQ1-1 to differences in host range between Pseudomonas syringae pv. phaseolicola and P. syringae pv. tabaci. Molecular Plant Pathology. 2009 10(6):837-42. Link.

Michelmore, R., Ochoa, O., and Wong, J. (2009) Bremia lactucae and lettuce downy mildew. In: Oomycete Genetics and Genomics: Diversity, Plant and Animal Interactions, and Toolbox. S. Kamoun and K. Lamour Eds. John Wiley, NJ.

Luo, K. Caldwell, Wroblewski T, Wright M.E., Michelmore R.W.. (2009) Proteolysis of a Negative Regulator of Innate Immunity Is Dependent on Resistance Genes in Tomato and Nicotiana benthamiana and Induced by Multiple Bacterial Effectors The Plant Cell. 2009 21:2458-2472. Link.

Wroblewski T, Caldwell KS, Piskurewicz U, Cavanaugh KA, Xu H, Kozik A, Ochoa O, McHale LK, Lahre K, Jelenska J, Castillo JA, Blumenthal D, Vinatzer BA, Greenberg JT and Michelmore RW (2009) Comparative large-scale analysis of interactions between several crop species and the effector repertoires from multiple pathovars of Pseudomonas and Ralstonia. Plant Physiology. 2009 10.1104/pp.109. Supplemental Data.

McHale LK, Truco MJ, Kozik A, Wroblewski T, Ochoa OE, Lahre KA, Knapp SJ, Michelmore RW. (2009) The genomic architecture of disease resistance in lettuce. Theor Appl Genet. 2009 118(3):565-80. Link. Supplemental Data.

Chapman MA, Hvala J, Strever J, Matvienko M, Kozik A, Michelmore RW, Tang S, Knapp SJ, Burke JM. (2009) Development, polymorphism, and cross-taxon utility of EST-SSR markers from safflower (Carthamus tinctorius L.). Theor Appl Genet. 2009 120(1):85-91. Link.

Jeuken MJ, Zhang NW, McHale LK, Pelgrom K, den Boer E, Lindhout P, Michelmore RW, Visser RG, Niks RE. (2009) Rin4 causes hybrid necrosis and race-specific resistance in an interspecific lettuce hybrid. Plant Cell 2009 21(10):3368-3378. Link.

Simko I, Pechenick DA, McHale LK, Truco MJ, Ochoa OE, Michelmore RW, Scheffler BE. (2009) Association mapping and marker-assisted selection of the lettuce dieback resistance gene Tvr1. BMC Plant Biol. 2009 9:135. Link.

2008

Michelmore, R. W., & Wong, J. (2008) Classical and molecular genetics of Bremia lactucae, cause of lettuce downy mildew European Journal of Plant Pathology. 2008 DOI 10.1007/s10658-008-9305-2.

Adams-Phillips L, Wan J, Tan X, Dunning FM, Meyers BC, Michelmore RW, Bent AF. (2008) Discovery of ADP-ribosylation and other plant defense pathway elements through expression profiling of four different Arabidopsis-Pseudomonas R-avr interactions. Mol Plant Microbe Interact. 2008 21(5):646-57. Link. Supplemental Data.

Kuang H, Caldwell KS, Meyers BC, Michelmore RW. (2008) Frequent sequence exchanges between homologs of RPP8 in Arabidopsis are not necessarily associated with genomic proximity. Plant J. 2008 54(1):69-80. Link.

Radwan O, Gandhi S, Heesacker A, Whitaker B, Taylor C, Plocik A, Kesseli R, Kozik A, Michelmore RW, Knapp SJ. (2008) Genetic diversity and genomic distribution of homologs encoding NBS-LRR disease resistance proteins in sunflower. Mol Genet Genomics. 2008 280(2):111-125. Link.

Barker MS, Kane NC, Matvienko M, Kozik A, Michelmore RW, Knapp SJ, Rieseberg LH. (2008) Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years. Mol Biol Evol. 2008 25(11):2445-55. Link.

Heesacker A, Kishore VK, Gao W, Tang S, Kolkman JM, Gingle A, Matvienko M, Kozik A, Michelmore RM, Lai Z, Rieseberg LH, Knapp SJ (2008) SSRs and INDELs mined from the sunflower EST database: abundance, polymorphisms, and cross-taxa utility. Theor Appl Genet. 2008 117(7):1021-9. Link.

Pignatta D, Dilkes B, Wroblewski T, Michelmore RW, Comai L. (2008) Transgene-induced gene silencing is not affected by a change in ploidy level. PLoS ONE. 2008 Aug 26;3(8):e3061. Link.

Tomilov AA, Tomilova NB, Wroblewski T, Michelmore R, Yoder JI. (2008) Trans-specific gene silencing between host and parasitic plants. Plant J. 2008 Nov;56(3):389-97. Link.

2007

Chen, J., Agrawal, V., Rattray, M., West, M.A.L., St.Clair, D.A., Michelmore, R.W., Coughlan, S.J., Meyers, B.C. (2007) A comparison of microarray and MPSS technology platforms for expression analysis of Arabidopsis. BMC Genomics. 2007 8:414. 2007.

Truco MJ, Antonise R, Lavelle D, Ochoa O, Kozik A, Witsenboer H, Fort SB, Jeuken MJ, Kesseli RV, Lindhout P, Michelmore RW, Peleman J. (2007) A high-density, integrated genetic linkage map of lettuce (Lactuca spp.). Theor Appl Genet. 2007 115(6):735-46. Link. Supplemental Data.

Argyris J, Dahal P, Truco MJ, Ochoa O, Still DW, Michelmore RW, Bradford KJ (2007) Genetic analysis of lettuce seed thermoinhibition. Acta Horticulturae. Link.

West, M.A.L., Kim, K., Kliebenstein, D., van Leeuwen, H., Michelmore, R.W., Doerge, R.W., St Clair, D.A. (2007) Global eQTL mapping reveals the complex genetic architecture of transcript-level variation in Arabidopsis. Genetics. 2007 175:1441-50. Link.

Tan X, Meyers BC, Kozik A, West MA, Morgante M, St Clair DA, Bent AF, Michelmore RW. (2007) Global Expression Analysis of NBS-LRR Encoding Genes in Arabidopsis BMC Plant Biology. Link. Supplemental Data.

van Leeuwen, H., Kliebenstein, D.J., West, M.A.L., Kim, K., van Poecke, R., Katagiri, F., Michelmore, R.W., Doerge, R.W., St.Cla (2007) Natural variation among Arabidopsis thaliana accessions for transcriptome response to exogenous salicylic acid. Plant Cell. 2007 19:2099-110. Link.

Rose, L.E., Michelmore, R.W. & Langley, C.H. (2007) Natural variation in the Pto disease resistance gene within species of wild tomato (Lycopersicon) II. Population genetics of Pto. Genetics. 2007 175:1307-1319. Link.

Zhang FZ, Wagstaff C, Rae AM, Sihota AK, Keevil CW, Rothwell SD, Clarkson GJ, Michelmore RW, Truco MJ, Dixon MS, Taylor G. (2007) QTLs for shelf life in lettuce co-locate with those for leaf biophysical properties but not with those for leaf developmental traits. J Exp Bot. 2007 58(6):1433-49. Link.

Wroblewski T, Piskurewicz U, Tomczak A, Ochoa O, Michelmore RW. (2007) Silencing of the major family of NBS-LRR-encoding genes in lettuce results in the loss of multiple resistance specificities. Plant J. 2007 51(5):803-18. Link.

Church SA, Livingstone K, Lai Z, Kozik A, Knapp SJ, Michelmore RW, Rieseberg LH. (2007) Using Variable Rate Models to Identify Genes Under Selection in Sequence Pairs: Their Validity and Limitations for EST Sequences. Journal of Molecular Evolution 2007 64(2):171-80. Link.

2006

Timms L, Jimenez R, Chase M, Lavelle D, McHale L, Kozik A, Lai Z, Heesacker A, Knapp S, Rieseberg L, Michelmore R, Kesseli R. (2006) Analyses of synteny between Arabidopsis thaliana and species in the Asteraceae reveal a complex network of small syntenic. Genetics. 2006 Aug;173(4):2227-2235. Link.

Kliebenstein D.J., West M.A., van Leeuwen H., Kim K., Doerge R.W., Michelmore R.W., St Clair D.A. (2006) Genomic survey of gene expression diversity in Arabidopsis thaliana. Genetics. 2006 172:1179-1189. Link.

West MA, van Leeuwen H, Kozik A, Kliebenstein DJ, Doerge RW, St Clair DA, Michelmore RW. (2006) High-density haplotyping with microarray-based expression and single feature polymorphism markers in Arabidopsis. Genome Res 2006 Jun; 16(6):787-95. Link.

Bushman, B.S., Scholte, A.A., Cornish, K., Scott, D.J., Brichta, J.L., Vederas, J.C., Ochoa, O., Michelmore, R.W., Shintani, D., (2006) Identification and characterization of natural rubber from two Lactuca species. Phytochemistry 67:2590-2596.

McHale, L., Tan, X., Koehl, P., Michelmore, R.W. (2006) Plant NBS-LRR proteins: adaptable guards. Genome Biology. 2006 7:212. Link. Supplemental Data.

Kuang, H., Ochoa, O.E., Nevo, E., Michelmore, R.W. (2006) The disease resistance gene Dm3 is infrequent in natural populations of Lactuca serriola due to deletions and frequent gene conversions at the RGC2 locus. Plant J. 2006 47(1):38-48. Link.

2005

Bernal, A., Pan, Q., Pollack, J., Rose, L., Willets, N., Kozik, A., Michelmore, R. (2005) Functional dissection of the Pto resistance gene using DNA shuffling. J. Biol. Chem. 2005 280:23073-83. Link.

Rose, L., Langley, C., Bernal, A., Michelmore, R. (2005) Natural variation in the Pto pathogen resistance gene within species of wild tomato (Lycopersicon):I. Functional analysis of Pto Alleles. Genetics. 2005 171:345-57. Link.

Kim, K., West, M.A.L., Michelmore, R.W., St. Clair, D.A., and Doerge, R.W. (2005) Old methods for new ideas: genetic dissection of the determinants of gene expression levels.In: Genome Exploitation: Data Mining the Genome. 23rd Stadler Symposium Springer Science. 2005 pp 87 -107.

Wroblewski, T., Tomczak, A., and Michelmore, R. W. (2005) Optimization of Agrobacterium-mediated transient assays of gene expression in lettuce, tomato and Arabidopsis. Plant Biotechnology Journal. 2005 3:259-273. Link.

Argyris J, Truco MJ, Ochoa O, Knapp SJ, Still DW, Lenssen GM, Schut JW, Michelmore RW, Bradford KJ. (2005) Quantitative trait loci associated with seed and seedling traits in Lactuca. Theor Appl Genet. 2005 Nov;111(7):1365-1376. Link.

2004

Brown, S., Koike, S., Ochoa, O., Laemmlen, F. and Michelmore, R.W. (2004) Insensitivity to the fungicide, fosetyl-aluminum, in California isolates of lettuce downy mildew, Bremia lactucae. Plant Disease. 2004 46:1059-1069.

Kuang, H., Woo, S.-S., Meyers, B., Nevo, E. and Michelmore, R.W. (2004) Multiple genetic processes result in heterogeneous rates of evolution within the major cluster of disease resistance genes in lettuce. Plant Cell. 2004 16:2870-2894. Link.

Rose L.E., Bittner-Eddy, P.D., Langley, C.H., Holub, E.B., Michelmore, R.W., and Beynon, J.L. (2004) The maintenance of extreme amino acid diversity at the resistance gene RPP13 in Arabidopsis thaliana. Genetics. 2004 166:1517-1527. Link.

2003

Sicard, D., Legg, E.J., Brown, S., Babu, N., Ochoa, O., Michelmore, R.W. (2003) A genetic map of the lettuce downy mildew fungus, Bremia lactucae constructed from molecular markers and avirulence genes. Fungal Genetics and Biology. 2003 39:16-30. Link.

Cannon S.B., Kozik A., Chan B., Michelmore R., Young N.D. (2003) DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology-discovery, and visualization. Genome Biology. 2003 4:R68. Link.

Meyers BC, Kozik A, Griego A, Kuang H, Michelmore RW. (2003) Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis. Plant Cell. 2003 15(4):809-34. Link. Supplemental Data.

Michelmore, R.W. (2003) Impact zone: genomics and breeding for durable disease resistance. Current Opinion in Plant Biology. 2003 6:397-404. Link.

Saltveit M.E., Ochoa, O., Reinaldo Campos-Vargas, R., and Richard Michelmore, R.W. (2003) Lines of lettuce selected for ethylene insensitivity at the seedling stage displayed variable responses to ethylene or wounding as mature heads. Postharvest Biology and Technology. 2003 27:277-283. Link.

Moreno-Vaquez, S., Ochoa, O., Faber, N., Chao, S., Jacobs, J.M.E., Maisonneuve, B., Kesseli, R., Michelmore, R.W. (2003) SNP-based codominant markers for a recessive gene conferring resistance to corky root rot (Rhizomonas suberifaciens) in lettuce (Lactuca sativa). Genome. 2003 46:1059-1069. Link.

2002

Shen, K.A., Chin, D.B., Arroyo-Garcia, R., Ochoa, O.E., Lavelle, D.O., Wroblewski, T., Meyers B.C., and Michelmore, R.W. (2002) Dm3 is one member of a large constitutively-expressed family of NBS-LRR encoding genes. Mol Plant Microbe Interact. 2002 15:251-261. Link.

Chang, J.H., Tai, Y.-S., Bernal, A.J., Lavelle, D.T., Staskawicz, B.J., Michelmore, R.W. (2002) Functional analysis of the Pto resistance gene family in tomato. Mol Plant Microbe Interact. 2002 15:281-191. Link.

Kozik A, Kochetkova E, Michelmore R. (2002) GenomePixelizer - a visualization program for comparative genomics within and between species. Bioinformatics. 2002 18(2):335-6. Link.

Michelmore, R.W. (2002) Natural and artificial evolution of disease resistance genes. Proc. 10th Int. Congr. Mol. Plant Microbe Interact. 2002 pp 23 - 29.

Mondragón-Palomino, M., Meyers, B.C., Michelmore, R.W., Gaut, B.S. (2002) Patterns of Positive Selection in the Complete NBS-LRR Gene Family of Arabidopsis thaliana. Genome Res. 2002 12:1305-1315. Link.

Meyers, B.C., Morgante, M, and Michelmore, R.W. (2002) TIR-X and TIT-NBS proteins: two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes. Plant Journal. 2002 32:77-92

2001

Gedil, M.A., Slabaugh, M.B., Berry, S., Johnson, R., Michelmore, R.W., Miller, J., Gulya, T., Knapp, S.J. (2001) Candidate disease resistance genes in sunflower cloned using conserved nucleotide binding site motifs: genetic mapping and linkage to the downy mildew resistance gene Pl1. Genome. 2001 44:205-212. Link.

Chang, J.H., Tobias, C.M., Staskawicz, B.J., Michelmore, R.W. (2001) Functional studies of the bacterial avirulence protein AvrPto by mutational analysis. Mol Plant Microbe Interact. 2001 14:451-459. Link.

Chin, D.B., Arroyo-Garcia, R., Ochoa, O., Kesseli, R.V., Lavelle, D.O., Michelmore, R.W. (2001) Recombination and spontaneous mutation at the major cluster of resistance genes in lettuce (Lactuca sativa). Genetics. 2001 157:831-849. Link.

2000

Johnson, W.C., Jackson, L.E. Ochoa, O., van Wijk, R., Peleman, J., St.Clair, D.A., Michelmore, R.W. (2000) A shallow-rooted crop and its wild progenitor differ at loci determining root architecture and deep soil water extraction. Theor. Appl. Genet. 2000 101:1066-1073.

Chang, J.H., Rathjen, J.P. Bernal, A.J., Staskawicz, B.J., Michelmore, R.W. (2000) AvrPto enhances growth and necrosis caused by Pseudomonas syringae pv. tomato in tomato lines lacking either Pto or Prf. Mol. Plant Microbe Interact. 2000 13:568-571. Link.

Michelmore, R.W. (2000) Genomic approaches to plant disease resistance. Curr. Opin Curr. Opin. Plant Biol. 2000 3:125-131. Link.

1999

Shiue, Y.-L., Bickel, L.A., Caetano, A.R., Millon, L.V., Clark, R., Eggleston, M.L., Michelmore, R.W., Bailey, E., Guerin, G., G (1999) A syntenic map of the horse genome comprised of 240 microsatellite and RAPD markers Animal Genetics. 1999 30:1-9. Link.

Rathjen, J.P., Chang, J.H., Staskawicz, B.S., Michelmore, R.W. (1999) Activated Pto mediates the AvrPto-dependent hypersensitive disease resistance response in N. benthamiana and tomato. EMBO J. 1999 18:3232-3240.

Irwin S.V., Kesseli R.V., Waycott W., Ryder E.J. Cho J.J., and Michelmore R.W. (1999) Identification of PCR-based markers flanking the recessive LMV resistance gene mo1 in an intraspecific cross of lettuce. Genome. 1999 42:982-986.

Waycott, W., Fort, S., Ryder, E.J., Michelmore, R.W. (1999) Mapping of twelve morphological genes relative to molecular markers in lettuce (Lactuca sativa L.) Heredity. 1999 82:245-251.

Sicard, D., Woo, S.-S., Arroyo-Garcia, R., Ochoa. O., Nguyen, D., Korol, A., Nevo, E., and Michelmore, R.W. (1999) Molecular diversity at the major cluster of disease resistance genes in cultivated and wild Lactuca spp. Theor. Appl. Genet. 1999 99:405-418.

Meyers, B.C., Dickerman, A.W., Michelmore, R.W., Sivaramakrishnan, S., Sobral, B.W. and Young, N.D. (1999) Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily. Plant J. 1999 20:317-332.

Michelmore R.W. (1999) Structure, function and evolution of resistance gene clusters in plants, particularly the Pto and Dm3 loci. Proc. 9th Int. Congr. Mol. Plant Microbe Interact. 1999 pp232-237.

1998

Michelmore, R.W. and Meyers, B.C. (1998) Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process Genome Research. 1998 8:1113-1130. Link.

Witsenboer, H., Vogel, J., Michelmore, R.W. (1998) Identification, genetic localization, and allelic diversity of selectively amplified microsatellite polymorphic loci in lettuce and wild relatives (Lactuca spp.). Genome. 1998 40:923-936

Meyers, B.C., Shen, K.A., Rohani, P., Gaut, B.S., Michelmore, R.W. (1998) Receptor-like genes in the major resistance locus of lettuce are subject to divergent selection Plant Cell. 1998 10:1833-1846. Link.

Shen, K.A., Meyers, B.C., Islam-Faridi, M.N. Chin, D.B., Stelly, D.M., Michelmore, R.W. (1998) Resistance gene candidates identified using PCR with degenerate primers map to resistance genes clusters in lettuce. Mol. Plant-Microbe Interact. 1998 11:815-823. Link.

Meyers, B.C., Chin, D.B., Shen, K.A., Sivaramakrishnan, S., Lavelle, D.O., Zhang, Z., Michelmore, R.W. (1998) The major resistance gene cluster in lettuce is highly duplicated and spans several megabases Plant Cell. 1998 10:1817-1832. Link.

1997

Okubara, P.A., Arroyo-Garcia, R., Shen, K.A., Mazier, M. Meyers, B.C., Ochoa, O., Kim, Shinje, S., Yang, C.-H., Michelmore, R.W. (1997) A transgenic mutant of Lactuca sativa (lettuce) with a T-DNA tightly linked to the loss of downy mildew resistance. Molec Plant Microbe Interact. 1997 10:970-977. Link.

Fritjers, A.C.J., Zhang, Z., van Damme, M., Wang, G.-L., Ronald, P.C. and Michelmore, R.W. (1997) Construction of a bacterial artificial chromosome library containing large EcoRI and HindIII genomic fragments of lettuce. Theor. Appl. Genet. 1997 94:390-399

Kesseli, R. V. and Michelmore, R. W. (1997) The Compositae: systematically fascinating but specifically neglected. In Genome Mapping in Plants, A.H. Paterson ed. R.G. Landes Co. 1997 pp179 -191

1996

Hill, M., Witsenboer, H., Zabeau, M., Vos, P., Kesseli, R., Michelmore, R. W. (1996) AFLP fingerprinting as a tool for studying genetic relationships in Lactuca spp. Theor. Appl. Genet. 1996 93:1202-1210.

Michelmore, R.W. (1996) Big news for plant transformation (Commentary) Nature Biotechnology. 1996 14:1653-1654. Link.

Michelmore, R.W. (1996) Flood warning: resistance genes unleashed (News and Views) Nature Genetics. 1996 14:376-378. Link.

Kesseli, R., H. Witsenboer, M. Hill, Y.-H. Zhang, M. Chase and R. Michelmore. (1996) Genome organization and the evolution of disease resistance genes in Lactuca spp. and the prospects for comparative mapping in the Compositae. In Proc. Int. Compositae Conf., Kew. 1994. Biology and Utilizati 1996 Vol 2. pp1-8.

Anderson, P. A., Okubara, P.A., Arroyo-Garcia, R., Meyers, B.C., Michelmore, R.W. (1996) Molecular analysis of irradiation-induced and spontaneous deletion mutants at a disease resistance locus in Lactuca sativa. Mol. Gen. Genet. 1996 251:316-325. Link.

Scofield, S.R. Tobias, C.M., Rathjen, J.P., Chang, J.H., Lavelle, D.T., Michelmore, R.W., and Staskawicz, B.J. (1996) Molecular basis of gene-for-gene specificity in bacterial speck disease of tomato. Science. 1996 274:2063-2065. Link.

1995

Michelmore, R.W. (1995) Isolation of disease resistance genes from crop plants. Curr. Opinions in Biotechnology. 1995 6:145-152

Michelmore, R. (1995) Molecular approaches to manipulation of disease resistance genes. Annu. Rev. Phytopathol. 1995 15:393-427

Witsenboer, H., Kesseli, R.V., Fortin, M., Stangellini, M., Michelmore, R.W. (1995) Sources and genetic structure of a cluster of genes for resistance to three pathogens in lettuce. Theor. Appl. Genet. 1995 91:178-188

1994

Kesseli, R.V., I. Paran, and R.W. Michelmore (1994) Analysis of a detailed genetic linkage map of Lactuca sativa (lettuce) constructed from RFLP and RAPD markers. Genetics. 1994 136:1435-1446. Link.

Michelmore, R.W., Anderson, P., Okubara, P., Witsenboer, H. (1994) Clusters of resistance genes in lettuce: map-based cloning in non-intensively studied species. NATO ASI series, Vol. H 81, Pl. Mol. Biol. Eds. G. Coruzzi & 1994 pp501-509.

Michelmore, R.W., Kesseli, R.V., and Ryder, E.J. (1994) Genetic mapping in lettuce. In: DNA Markers in Plants, eds, R.L. Phillips and I.K. Vasil. K 1994 pp223-239.

Robbins, M.A., Witsenboer, H., Michelmore, R.W. Laliberte, J.-F., and Fortin M.G. (1994) Genetic mapping of turnip mosaic virus resistance in Lactuca sativa. Theor. Appl. Genet. 1994 89:583-589.

Okubara PA, Anderson PA, Ochoa OE, Michelmore RW. (1994) Mutants of downy mildew resistance in Lactuca sativa (lettuce). Genetics. 1994 Jul;137(3):867-74. Link.

Maisoneuve, B., Anderson, P. and Michelmore, R.W. (1994) Rapid mapping of two genes for resistance to downy mildew derived from Lactuca serriola to existing clusters of resistance genes. Theor. Appl. Genet. 1994 89:96-104.

1993

Paran, I. and R.W. Michelmore (1993) Development of reliable PCR-based markers linked to downy mildew resistance genes in lettuce. Theor. Appl. Genet. 1993 85:985-993.

Judelson, H.S., Dudler, R., Pieterse, C.M.J., Unkles, S.E. and Michelmore, R.W. (1993) Expression and antisense inhibition of transgenes in Phytophthora infestans is modulated by choice of promoter and position effects. Gene. 1993 133:63-69. Link.

Yang, C.-H., J. Ellis, and R.W. Michelmore. (1993) Infrequent transposition of Ac in lettuce. Pl. Mol. Biol. 1993 22:973-805. Link.

Kesseli, R.V., Paran, I., Ochoa, O., Wang, W.-C., and Michelmore, R.W. (1993) Linkage map of lettuce (Lactuca sativa). In: Genetic Maps, 6th Ed. S. J. O'Brien (ed.). Cold Spring Ha 1993 6: 229-233.

Michelmore, R.W., Anderson, P.A., Witsenboer, H., Kesseli, R.V., Paran, I., Francis, D.M. and Ochoa, O. (1993) Molecular markers and genome analysis in the manipulation of lettuce downy mildew. In: Advances in Molecular Genetics of Plant Microbe Interactions 1993 2:517-523.

Kesseli, R.V., Witsenboer, H., Vandemark, G.J., Stangellini, M.E., and Michelmore, R.W. (1993) Recessive resistance to Plasmopara lactucae-radicis maps by bulked segregant analysis to a cluster of dominant resistance genes. Mol. Pl. Microbe Interact. 1993 6:722-728.

Yang, C.-H., Scofield, S., Caroll, B., Jones, J., Michelmore, R.W. (1993) Transposition of Ds in plants of lettuce. Mol. Gen. Genet. 1993 241:389-398.

Francis, D.M. and R.W. Michelmore (1993) Two classes of chromosome-sized molecules are present in Bremia lactucae. Exptal. Mycol. 1993 17:284-300.

1992

Paran, I., R.V. Kesseli, and R.W. Michelmore (1992) Recent amplification of triose phosphate isomerase related sequences in lettuce. Genome. 1992 35:627-635. Link.

Judelson, H.S., B.M. Tyler, and R.W. Michelmore (1992) Regulatory sequences for expressing genes in oomycete fungi. Mol. Gen. Genet. 1992 234:138-146. Link.

Michelmore, R.W., R.V. Kesseli, D.M. Francis, I. Paran, M.G. Fortin, and C.-H. Yang (1992) Strategies for cloning plant disease resistance genes. In: Molecular Plant Pathology - A Practical Approach. Ed. S. G 1992 Vol2, pp233-288

Judelson, H.S. and R.W. Michelmore (1992) Temperature and genotype interactions in the expression of host resistance in lettuce downy mildew. Physiol. Mol. Plant Pathol. 1992 40:233-245

1991

Michelmore, R.W., I. Paran, and R.V. Kesseli (1991) Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations. Proc. Natl. Acad. Sci. 1991 88:9828-9832

Paran, I., R.V. Kesseli, and R.W. Michelmore (1991) Identification of RFLP and RAPD markers linked to downy mildew resistance genes in lettuce using near-isogenic lines. Genome. 1991 34:1021-1027

Vandemark, G.J., M.E. Stangellini, S.L. Rasmussen, and R.W. Michelmore. (1991) Inheritance of resistance in lettuce to Plasmopara lactucae-radicis. Phytopathology. 1991 82:272-274.

Schettini, T.M., E.J. Legg and R.W. Michelmore. (1991) Insensitivity to metalaxyl in California populations of Bremia lactucae and resistance of California lettuce cultivars to downy mildew. Phytopathology 1991 81:64-70.

Judelson, H.S., B. Tyler, and R.W. Michelmore (1991) Stable transformation of the potato late blight fungus, Phytophthora infestans. Mol. Plant-Microbe Interact. 1991 4:602-607

Judelson, H.S. and R.W. Michelmore. (1991) Transient expression of genes in the oomycete, Phytophthora infestans, using regulatory sequences from Bremia lactucae. Curr. Genet 1991 19:453-459.

Kesseli, R. V., O. Ochoa and R. W. Michelmore. (1991) Variation at RFLP loci in Lactuca spp. and the origin of cultivated lettuce (L. sativa). Genome 1991 34: 430 - 436.

1990

Francis, D.M., S.H. Hulbert and R.W. Michelmore. (1990) Genome size and complexity of the obligate fungal pathogen, Bremia lactucae. Experimental Mycology 1990 14:299-309.

Judelson, H.S. and R.W. Michelmore. (1990) Highly abundant and stage specific mRNAs in the obligate pathogen, Bremia lactucae. Molecular Plant Microbe Interactions 1990 3:225-232.

1989

Ilott, T. W., S. H. Hulbert and R. W. Michelmore. (1989) Genetic analysis of the gene-for-gene interaction between lettuce (Lactuca sativa) and Bremia lactucae. Phytopathology 1989 79:888-897.

Judelson, H. S. and R. W. Michelmore. (1989) Strategies for cloning avirulence genes for Bremia lactucae. In: B. Staskawicz, P. Alquist and O. Yoder (eds.). Molecular Bio 1989 pp. 71-85.

Judelson, H. S. and R. W. Michelmore. (1989) Structure and expression of a gene encoding Hsp 70 from the Oomycete fungus, Bremia lactucae. Gene 1989 79:207-217.

1988

Hulbert, S. H. and R. W. Michelmore. (1988) DNA restriction fragment length polymorphism and somatic variation in the lettuce downy mildew fungus, Bremia lactucae. Molecular Plant-Microbe Interactions 1988 1:17-24.

Hulbert, S. H., T. W. Ilott, E. J. Legg, S. E. Lincoln, E. S. Lander and R. W. Michelmore. (1988) Genetic analysis of the fungus, Bremia lactucae, using restriction fragment length polymorphisms. Genetics 1988 120:947-958.

Michelmore, R. W., S. H. Hulbert, T. Ilott and B. Farrara. (1988) Genetics of downy mildews. In: R. H. Williams and D. S. Ingram (eds.). Genetics of Pathoge 1988 Vol. 6, pp. 53-79.

1987

Ilott, T. W., M. E. Durgan and R. W. Michelmore. (1987) Genetics of virulence in California populations of Bremia lactucae (lettuce downy mildew). Phytopathology 1987 77:1381-1386.

Michelmore, R. W. and S. H. Hulbert. (1987) Molecular markers for the genetic analysis of phytopathogenic fungi. Annual Review of Phytopathology 1987 25:383-404.

Michelmore, R. W., S. H. Hulbert, B. S. Landry and H. Leung. (1987) Towards a molecular understanding of lettuce downy mildew. In: P. R. Day and G. J. Jellis (eds.). Genetics and Plant Pathog 1987 pp. 221-231.

1984

Michelmore, R. W., J. M. Norwood, D. S. Ingram, I. R. Crute and P. Nicholson. (1984) The inheritance of virulence in Bremia lactucae to match resistance factors 3, 4, 5, 6, 8, 9, 10 and 11 in lettuce (Lactuca sativa). Plant Pathology 1984 32:177-186.

1983

Norwood, J. M., R. W. Michelmore, I. R. Crute and D. S. Ingram. (1983) The inheritance of specific virulence of Bremia lactucae (Downy mildew) to match R-factors 1, 2, 4, 6 and 11 in lettuce (Lactuca sativa). Plant Pathology 1983 32:176-177.

1982

Michelmore, R. W. and I. R. Crute. (1982) A method for determining the virulence phenotype of isolates of Bremia lactucae isolates. Transactions of the British Mycological Society 1982 79: 542-546.

Michelmore, R. W. and D. S. Ingram. (1982) Secondary homothallism in Bremia lactucae Regel. Transactions of the British Mycological Society 1982 78:1-9.

Michelmore, R. W. and E. Sansome. (1982) The cytology of heterothallism and secondary homothallism in Bremia lactucae. Transactions of the British Mycological Society 1982 79:291-297.

1981

Michelmore, R. W. and D. S. Ingram. (1981) Recovery of progeny following sexual reproduction of Bremia lactucae. Transactions of the British Mycological Society 1981 77:131-137.

Michelmore, R. W. (1981) Sexual and asexual sporulation in the downy mildews. In: D. Spencer (ed.). The Downy Mildews. Academic Press. 1981 pp.165-181.

Michelmore, R. W. and D. S. Ingram. (1981) The origin of gametangia in the heterothallic isolates of Bremia lactucae Regel. Transactions of the British Mycological Society 1981 76:425-432.

1980

Michelmore, R. W. and D. S. Ingram. (1980) Heterothallism in Bremia lactucae Regel. Transactions of the British Mycological Society 1980 75:47-56.