Tools for database data manipulation and analysis
| Given a path to a directory, this program appends all the files with the specified extension into one. | |
| dbwise | This program is a database "aid" for choosing a group of chimeras according to characteristics they have in common in terms of both amino acid sequence and phenotype. |
| highest_value | This program finds the highest chi-square value for each permutation in a permutation analysis using “Qilin2”. |
| randomizer | This program randomizes phenotypic data for permutation tests in the statistical analysis of DNA shuffling data. |
| stop_codon_finder | This program ensures that all the sequences in the protein sequence file of the chimeras generated from DNA shuffling are full-length. |
| t_delim_fasta | This program puts tabs into a nucleotide sequence. |
| translator | This program is used for accurate and automated translation of nucleotide sequence into protein sequence of the Pto chimeras generated by DNA shuffling. |
| transposer | This program makes a transpose of the n x m matrix. |
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qilin2 |
This SAS-based program uses univariate logistic regression (Hosmer and Lemeshow, 1989) at each amino acid position to determine whether variation at a particular position is associated with a phenotype. |
| This program is used to identify which amino acids (or combinations of amino acids) are associated with a particular phenotype. |