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  Publications
links to the PubMed entry
links to other sources.
    -- 2017 --
  • Sandoya GV, Gurung S, Short DP, Subbarao KV, Michelmore RW, Hayes RW.  (2017Genetics of resistance in lettuce to races 1 and 2 of Verticillium dahliae from different host species Euphytica 2017 213:20     
    -- 2016 --
  • Scaglione D, Reyes-Chin-Wo S, Acquadro A, Froenicke L, Portis E, Beitel C, Tirone M, Mauro R, Lo Monaco A, Mauromicale G, Faccioli P, Cattivelli L, Rieseberg L, Michelmore R, Lanteri S. (2016The genome sequence of the outbreeding globe artichoke constructed de novo incorporating a phase-aware low-pass sequencing strategy of F1 progeny. Sci Rep. 2016 Jan 20;6:19427.     
  • Yoong FY, O'Brien LK, Truco MJ, Huo H, Sideman R, Hayes R, Michelmore RW, Bradford KJ. (2016Genetic Variation for Thermotolerance in Lettuce Seed Germination Is Associated with Temperature-Sensitive Regulation of ETHYLENE RESPONSE FACTOR1 (ERF1). Plant Physiol. 2016 Jan;170(1):472-88.     
  • Scaglione D, Reyes-Chin-Wo S, Acquadro A, Froenicke L, Portis E, Beitel C, Tirone M, Mauro R, Lo Monaco A, Mauromicale G, Faccioli P, Cattivelli L, Rieseberg L, Michelmore R, Lanteri S. (2016Corrigendum: The genome sequence of the outbreeding globe artichoke constructed de novo incorporating a phase-aware low-pass sequencing strategy of F1 progeny. Sci Rep. 2016 May 23;6:25323.     
  • Bertioli, D J and Cannon, S B and Froenicke, L and Huang, G and Farmer, A D and Cannon, E K S and Liu, X and Gao, D and Clevenger, J and Dash, S and Ren, L and Moretzsohn, M C and Shirasawa, K and Huang, W and Vidigal, B and Abernathy, B and Chu, Y and Nie (2016The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nat Genet 2016 Apr;48(4):438-46.     
  • Parra L, Maisonneuve B, Schut J, Christopoulou M, Jeuken M, McHale L, Truco M-J, Crute I, Michelmore R (2016Rationalization of genes for resistance to Bremia lactucae in lettuce Euphytica 2016 210: 309-326.     
  • Kunjeti SG, Anchieta A, Martin FN, Choi YJ, Thines M, Michelmore RW, Koike ST, Tsuchida C, Mahaffee W, Subbarao KV, Klosterman SJ. (2016Detection and Quantification of Bremia lactucae by Spore Trapping and Quantitative PCR. Phytopathology 2016 Nov;106(11):1426-1437.     
  • Chadwick M, Gawthrop F, Michelmore RW, Wagstaff C, Methven L. (2016Perception of bitterness, sweetness and liking of different genotypes of lettuce. Food Chem. 2016 Apr 15;197(Pt A):66-74.     
    -- 2015 --
  • Christopoulou M, McHale L, Kozik A, Reyes-Chin Wo S, Wroblewski T, Michelmore RW. (2015Dissection of Two Complex Clusters of Resistance Genes in Lettuce (Lactuca sativa) Mol Plant Microbe Interact. 2015 Feb 4.     
  • Simko I, Ochoa O, Pel MA, Tsuchida C, Font I Forcada C, Hayes RJ, Truco MJ, Antonise R, Galeano CH, Michelmore R. (2015Resistance to downy mildew in lettuce cv. La Brillante is conferred by Dm50 gene and multiple QTLs. Phytopathology. 2015 Apr 27.     
  • Christopoulou M, Wo SR, Kozik A, McHale LK, Truco MJ, Wroblewski T, Michelmore RW. (2015Genome-Wide Architecture of Disease Resistance Genes in Lettuce G3 (Bethesda) 2015 Oct 8;5(12):2655-69.     
  • Derevnina L, Michelmore RW. (2015Wheat rusts never sleep but neither do sequencers: will pathogenomics transform the way plant diseases are managed? Genome Biol. 2015 Mar 2;16:44.     
  • Derevnina L, Chin-Wo-Reyes S, Martin F, Wood K, Froenicke L, Spring O, Michelmore R. (2015Genome Sequence and Architecture of the Tobacco Downy Mildew Pathogen Peronospora tabacina. Mol Plant Microbe Interact. 2015 Nov;28(11):1198-215.     
  • Lee J, Manning AJ, Wolfgeher D, Jelenska J, Cavanaugh KA, Xu H, Fernandez SM, Michelmore RW, Kron SJ, Greenberg JT. (2015Acetylation of an NB-LRR Plant Immune-Effector Complex Suppresses Immunity. Cell Rep. 2015 Nov 24;13(8):1670-82.     
    -- 2014 --
  • Hodgins KA, Lai Z, Oliveira LO, Still DW, Scascitelli M, Barker MS, Kane NC, Dempewolf H, Kozik A, Kesseli RV, Burke JM, Michelmore RW, Rieseberg LH. (2014Genomics of Compositae crops: reference transcriptome assemblies and evidence of hybridization with wild relatives Mol Ecol Resour. 2014 Jan;14(1):166-77.     
  • Mandel JR, Dikow RB, Funk VA, Masalia RR, Staton SE, Kozik A, Michelmore RW, Rieseberg LH, Burke JM4. (2014A target enrichment method for gathering phylogenetic information from hundreds of loci: An example from the Compositae. Appl Plant Sci. 2014 Feb 6;2(2).     
  • Pearl SA, Bowers JE, Reyes-Chin-Wo S, Michelmore RW, Burke JM1. (2014Genetic analysis of safflower domestication. BMC Plant Biol. 2014 Feb 6;14:43.     
  • Alex Beharav, Oswaldo Ochoa, Richard Michelmore  (2014Resistance in natural populations of three wild Lactuca species from Israel to highly virulent Californian isolates of Bremia lactucae Genetic Resources and Crop Evolution 2014 Vol 61, Issue 3     
  • Beitel CW, Froenicke L, Lang JM, Korf IF, Michelmore RW, Eisen JA, Darling AE. (2014Strain- and plasmid-level deconvolution of a synthetic metagenome by sequencing proximity ligation products. PeerJ. 2014 May 27;2:e415.     
  • Wroblewski T, Matvienko M, Piskurewicz U, Xu H, Martineau B, Wong J, Govindarajulu M, Kozik A, Michelmore RW. (2014Distinctive profiles of small RNA couple inverted repeat-induced post-transcriptional gene silencing with endogenous RNA silencing pathways in Arabidopsis. RNA. 2014 Dec;20(12):1987-99.     
  • Govindarajulu M, Epstein L, Wroblewski T, Michelmore RW. (2014Host-induced gene silencing inhibits the biotrophic pathogen causing downy mildew of lettuce. Plant Biotechnol J. 2014 Dec 9.     
    -- 2013 --
  • Matvienko M, Kozik A, Froenicke L, Lavelle D, Martineau B, Perroud B, Michelmore R. (2013Consequences of normalizing transcriptomic and genomic libraries of plant genomes using a duplex-specific nuclease and tetramethylammonium chloride. PLoS One. 2013 8(2), e55913.     
  • Truco, M. J., Ashrafi, H., Kozik, A., van Leeuwen, H., Bowers, J., Wo, S. R. C., Stoffel, K., Xu, H., Hill, T., Deynze, A. V., & Michelmore, R. W.  (2013An Ultra High-Density, Transcript-Based, Genetic Map of Lettuce G3: Genes| Genomes| Genetics. 2013      
  • Jenni S, Truco MJ, Michelmore RW. (2013Quantitative trait loci associated with tipburn, heat stress-induced physiological disorders, and maturity traits in crisphead lettuce. Theor Appl Genet 2013 Sep 28. [Epub ahead of print]     
  • Michelmore RW, Christopoulou M, Caldwell KS. (2013Impacts of resistance gene genetics, function, and evolution on a durable future. Annu Rev Phytopathol. 2013 May 15.[Epub]     
  • Simko I, Atallah AJ, Ochoa OE, Antonise R, Galeano CH, Truco MJ, Michelmore RW. (2013Identification of QTLs conferring resistance to downy mildew in legacy cultivars of lettuce. Sci Rep. 2013 Oct 7;3:2875     
  • De Cremer K, Mathys J, Vos C, Froenicke L, Michelmore RW, Cammue BP, De Coninck B. (2013RNAseq-based transcriptome analysis of Lactuca sativa infected by the fungal necrotroph Botrytis cinerea. Plant Cell Environ. 2013 Nov;36(11):1992-2007     
    -- 2012 --
  • Pandey, M.K., Monyo, E., Ozias-Akins, P., Liang, X., Guimar?es, P., Nigam, S.N., Upadhyaya, H.D., Janila, P., Zhang, X., Guo, B., Cook, D.R., Bertioli, D.J., Michelmore, R., Varshney, R.K. (2012Advances in Arachis genomics for peanut improvement. Biotechnology Advances. 2012 30:639-651.     
  • Lai, Z., Kane, N.C., Kozik, A., Hodgins, K.A., Dlugosch, K.M., Barker, M.S., Matvienko, M., Yu, Q., Pearl, S.A., Bell, G.D.M., Turner, K.G., Zou, Y., Guggisberg, A., Adams, K.L., Anderson, J.V., Horvath, D.P., Kesseli, R.V., Burke, J.M., Michelmore, R.W.  (2012Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression. Am. J. Bot. 2012 99: 209?218.     
  • Uwimana, B., Smulders, M.J.M., Hooftman, D.A.P., Hartman, Y., Jansen, J., McHale, L.K., Michelmore, R.W., Visser, R.G.F., van de Wiel, C.C.M. (2012Crop to wild introgression in lettuce: following the fate of crop genome segments in backcross populations. BMC Pl. Biol.  2012 12:43     
  • Stoffel, K., van Leeuwen, H., Kozik, A., Caldwell, D., Ashrafi, H., Cui, X., Tan, X., Hill, Reyes Chin-Wo, M.J., Truco, Michelmore, R.W., Van Deynze, A.  (2012Development and application of a 6.6 Million Feature Affymetrix GeneChip? for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.). BMC Genomics. 2012 13:185. doi: 10.1186/1471-2164-13-185.     
  • Lee, J., Teitzel, G.M., Martin, G.B., Michelmore, R.W., Greenberg, J.T.  (2012A role for type III effectors in the growth of Pseudomonas syringae on leaf surfaces. Plant Physiol.  2012 158:1803-18.     
  • Uwimana, B., Smulders, M.J.M., Hooftman, D.A.P., Jansen, H., McHale, L., Michelmore, R.W., Visser, R.G.F., van de Wiel, C.C.M.  (2012Hybridization between crops and their wild relatives: the contribution of cultivated lettuce (Lactuca sativa L.) to the vigour of crop-wild hybrids under drought, salinity and nutrient deficiency conditions. Theor. Appl. Genet. 2012 125:1097?1111. DOI 10.1007/s00122-012-1897-4      
  • Ashrafi, H., Hill, T., Stoffel, K., Kozik, A., Yao, J., Chin-Wo, S. R., & Van Deynze, A.  (2012De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes.  BMC genomics 2012  13(1), 571.     
  • Bachlava, E., Taylor, C. A., Tang, S., Bowers, J. E., Mandel, J. R., Burke, J. M., & Knapp, S. J. (2012SNP discovery and development of a high-density genotyping array for sunflower. PLoS One. 2012 ;7(1):e29814.     
  • Moody ML, Rieseberg LH. (2012Sorting through the chaff, nDNA gene trees for phylogenetic inference and hybrid identification of annual sunflowers (Helianthus sect. Helianthus). Mol Phylogenet Evol. 2012 Jul;64(1):145-55.     
    -- 2011 --
  • Argyris J, Truco MJ, Ochoa O, McHale L, Dahal P, Van Deynze A, Michelmore RW, Bradford KJ. (2011A gene encoding an abscisic acid biosynthetic enzyme (LsNCED4) collocates with the high temperature germination locus Htg6.1 in lettuce (Lactuca sp.). Theor Appl Genet. 2011 122(1):95-108.     
  • Simko, I., Hayes, R.J., Truco, M.-J., Michelmore, R.W. (2011Mapping a dominant negative mutation for triforine sensitivity in lettuce and its use as a selectable marker for detecting hybrids.  Euphytica 2011 182:157-166. doi:10.1007/s10681-011-0407-0.     
  • Hayes, R.J., McHale, L.K., Vallad, G.E., Truco, M-J., Michelmore, R.W., Klosterman, S.J., Maruthachalam, K., Krishna V. Subbarao, K.V.  (2011The inheritance of resistance to Verticillium wilt caused by race 1 isolates of Verticillium dahliae in the lettuce cultivar La Brillante. Theor. Appl. Genet.  2011 DOI 10.1007/s00122-011-1603-y.     
  • Cantu, D., Govindarajulu, M., Kozik, A., Wang, M., Chen, X., Michelmore, R.W., Dubcovsky, J.  (2011Next generation sequencing provides rapid access to the genome of Puccinia striiformis f. sp. tritici, the causal agent of wheat stripe rust. Plos One  2011 6:e24230.     
  • Hayes, R.J., McHale, L.K., Vallad, G.E., Truco, M-J., Michelmore, R.W., Klosterman, S.J., Maruthachalam, K., Krishna V. Subbarao, K.V.  (2011The inheritance of resistance to Verticillium wilt caused by race 1 isolates of Verticillium dahliae in the lettuce cultivar La Brillante. Theor. Appl. Genet. 2011 DOI 10.1007/s00122-011-1603-y.     
  • Cantu, D., Govindarajulu, M., Kozik, A., Wang, M., Chen, X., Michelmore, R.W., Dubcovsky, J. (2011Next-generation sequencing provides rapid access to the genes of wheat stripe rust. Plos One 2011 6:e24230.        
  • Tomich, T.P., Brodt, S., Ferris, H., Galt, R., Horwath, W.R., Kebreab, E., Leveau, Liptzin, D., Lubell, M., Merel, P., Michelmore, R., Rosenstock, T., Scow, K., Six, J., Williams, N., Yang, L. (2011Agroecology: A Review from a Global-Change Perspective. Annu. Rev. Environment Resources 2011 36:193-222.     
    -- 2010 --
  • Cantu D, Vanzetti LS, Sumner A, Dubcovsky M, Matvienko M, Distelfeld A, Michelmore RW, Dubcovsky J. (2010Small RNAs, DNA methylation and transposable elements in wheat. BMC Genomics. 2010 11:408.     
  • Cui X, You N, Girke T, Michelmore R, Van Deynze A. (2010Single feature polymorphism detection using recombinant inbred line microarray expression data. Bioinformatics. 2010 26(16):1983-9.     
  • Simko, I., Pechenick, D.A., McHale, L.K., Truco, M.J., Ochoa, O.E., Michelmore, R.W., Scheffler, B.E.  (2010Development of molecular markers for marker-assisted selection of dieback disease resistance in lettuce (Lactuca sativa). Acta Horticulturae. 2010 859:401-408.     
    -- 2009 --
  • Ferrante, P., Clarke, C., Cavanaugh, K., Michelmore, R.W., Buonaurio, R., Vinatzer, B.A. (2009Contributions of the effector gene hopQ1-1 to differences in host range between Pseudomonas syringae pv. phaseolicola and P. syringae pv. tabaci. Molecular Plant Pathology. 2009 10(6):837-42.     
  • Caldwell KS, Michelmore RW. (2009Arabidopsis thaliana Genes Encoding Defense Signaling and Recognition Proteins Exhibit Contrasting Evolutionary Dynamics. Genetics. 2009 Feb;181(2):671-84.      
  • Michelmore, R., Ochoa, O., and Wong, J. (2009Bremia lactucae and lettuce downy mildew. In: Oomycete Genetics and Genomics: Diversity, Plant and Animal Interactions, and Toolbox.  S. Kamoun and K. Lamour Eds. John Wiley, NJ. 2009      
  • Y. Luo, K. Caldwell, Wroblewski T, M.E. Wright, R.W. Michelmore. (2009Proteolysis of a Negative Regulator of Innate Immunity Is Dependent on Resistance Genes in Tomato and Nicotiana benthamiana and Induced by Multiple Bacterial Effectors The Plant Cell. 2009 21:2458-2472     
  • Wroblewski T, Caldwell KS, Piskurewicz U, Cavanaugh KA, Xu H, Kozik A, Ochoa O, McHale LK, Lahre K, Jelenska J, Castillo JA, Blumenthal D, Vinatzer BA, Greenberg JT and Michelmore RW (2009Comparative large-scale analysis of interactions between several crop species and the effector repertoires from multiple pathovars of Pseudomonas and Ralstonia. Plant Physiology. 2009 10.1104/pp.109.     Supplemental Data
  • McHale LK, Truco MJ, Kozik A, Wroblewski T, Ochoa OE, Lahre KA, Knapp SJ, Michelmore RW. (2009The genomic architecture of disease resistance in lettuce. Theor Appl Genet. 2009 118(3):565-80.     Supplemental Data
  • Chapman MA, Hvala J, Strever J, Matvienko M, Kozik A, Michelmore RW, Tang S, Knapp SJ, Burke JM. (2009Development, polymorphism, and cross-taxon utility of EST-SSR markers from safflower (Carthamus tinctorius L.). Theor Appl Genet. 2009 120(1):85-91.     
  • Jeuken MJ, Zhang NW, McHale LK, Pelgrom K, den Boer E, Lindhout P, Michelmore RW, Visser RG, Niks RE. (2009Rin4 causes hybrid necrosis and race-specific resistance in an interspecific lettuce hybrid. Plant Cell 2009 21(10):3368-3378.     
  • Simko I, Pechenick DA, McHale LK, Truco MJ, Ochoa OE, Michelmore RW, Scheffler BE. (2009Association mapping and marker-assisted selection of the lettuce dieback resistance gene Tvr1. BMC Plant Biol. 2009 9:135.     
    -- 2008 --
  • Michelmore, R. W., & Wong, J. (2008Classical and molecular genetics of Bremia lactucae , cause of lettuce downy mildew European Journal of Plant Pathology. 2008 DOI 10.1007/s10658-008-9305-2.      
  • Adams-Phillips L, Wan J, Tan X, Dunning FM, Meyers BC, Michelmore RW, Bent AF. (2008Discovery of ADP-ribosylation and other plant defense pathway elements through expression profiling of four different Arabidopsis-Pseudomonas R-avr interactions. Mol Plant Microbe Interact. 2008 21(5):646-57.     Supplemental Data
  • Kuang H, Caldwell KS, Meyers BC, Michelmore RW. (2008Frequent sequence exchanges between homologs of RPP8 in Arabidopsis are not necessarily associated with genomic proximity. Plant J. 2008 54(1):69-80.     
  • Radwan O, Gandhi S, Heesacker A, Whitaker B, Taylor C, Plocik A, Kesseli R, Kozik A, Michelmore RW, Knapp SJ. (2008Genetic diversity and genomic distribution of homologs encoding NBS-LRR disease resistance proteins in sunflower. Mol Genet Genomics. 2008 280(2):111-125     
  • Barker MS, Kane NC, Matvienko M, Kozik A, Michelmore RW, Knapp SJ, Rieseberg LH. (2008Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years. Mol Biol Evol. 2008 25(11):2445-55.     
  • Heesacker A, Kishore VK, Gao W, Tang S, Kolkman JM, Gingle A, Matvienko M, Kozik A, Michelmore RM, Lai Z, Rieseberg LH, Knapp SJ (2008SSRs and INDELs mined from the sunflower EST database: abundance, polymorphisms, and crosstaxa utility. Theor Appl Genet. 2008 117(7):1021-9.     
  • Pignatta D, Dilkes B, Wroblewski T, Michelmore RW, Comai L. (2008Transgene-induced gene silencing is not affected by a change in ploidy level. PLoS ONE.  2008 Aug 26;3(8):e3061.     
  • Tomilov AA, Tomilova NB, Wroblewski T, Michelmore R, Yoder JI. (2008Trans-specific gene silencing between host and parasitic plants. Plant J. 2008 Nov;56(3):389-97.      
    -- 2007 --
  • Chen, J., Agrawal, V., Rattray, M., West, M.A.L., St.Clair, D.A., Michelmore, R.W., Coughlan, S.J., Meyers, B.C.  (2007A comparison of microarray and MPSS technology platforms for expression analysis of Arabidopsis. BMC Genomics. 2007 8:414     
  • Truco MJ, Antonise R, Lavelle D, Ochoa O, Kozik A, Witsenboer H, Fort SB, Jeuken MJ, Kesseli RV, Lindhout P, Michelmore RW, Peleman J. (2007A high-density, integrated genetic linkage map of lettuce (Lactuca spp.). Theor Appl Genet. 2007 115(6):735-46     Supplemental Data
  • Argyris J, Dahal P, Truco MJ, Ochoa O, Still DW, Michelmore RW, Bradford KJ (2007Genetic analysis of lettuce seed thermoinhibition. Acta Horticulturae 2007      
  • West, M.A.L., Kim, K., Kliebenstein, D., van Leeuwen, H., Michelmore, R.W., Doerge, R.W., St Clair, D.A.  (2007Global eQTL mapping reveals the complex genetic architecture of transcript-level variation in Arabidopsis. Genetics. 2007 175:1441-50     
  • Tan X, Meyers BC, Kozik A, West MA, Morgante M, St Clair DA, Bent AF, Michelmore RW. (2007Global Expression Analysis of NBS-LRR Encoding Genes in Arabidopsis BMC Plant Biology. 2007 0.330555556     Supplemental Data
  • van Leeuwen, H., Kliebenstein, D.J., West, M.A.L., Kim, K., van Poecke, R., Katagiri, F., Michelmore, R.W., Doerge, R.W., St.Cla (2007Natural variation among Arabidopsis thaliana accessions for transcriptome response to exogenous salicylic acid. Plant Cell. 2007 19:2099-110     
  • Rose, L.E., Michelmore, R.W. & Langley, C.H.  (2007Natural variation in the Pto disease resistance gene within species of wild tomato (Lycopersicon) II. Population genetics of Pto. Genetics.  2007 175:1307-1319     
  • Zhang FZ, Wagstaff C, Rae AM, Sihota AK, Keevil CW, Rothwell SD, Clarkson GJ, Michelmore RW, Truco MJ, Dixon MS, Taylor G. (2007QTLs for shelf life in lettuce co-locate with those for leaf biophysical properties but not with those for leaf developmental traits. J Exp Bot. 2007 58(6):1433-49.     
  • Wroblewski T, Piskurewicz U, Tomczak A, Ochoa O, Michelmore RW. (2007Silencing of the major family of NBS-LRR-encoding genes in lettuce results in the loss of multiple resistance specificities. Plant J. 2007 51(5):803-18.     
  • Church SA, Livingstone K, Lai Z, Kozik A, Knapp SJ, Michelmore RW, Rieseberg LH. (2007Using Variable Rate Models to Identify Genes Under Selection in Sequence Pairs: Their Validity and Limitations for EST Sequences. Journal of Molecular Evolution 2007 64(2):171-80.     
    -- 2006 --
  • Timms L, Jimenez R, Chase M, Lavelle D, McHale L, Kozik A, Lai Z, Heesacker A, Knapp S, Rieseberg L, Michelmore R, Kesseli R. (2006Analyses of synteny between Arabidopsis thaliana and species in the Asteraceae reveal a complex network of small syntenic. Genetics. 2006 Aug;173(4):2227-2235.      
  • Kliebenstein D.J., West M.A., van Leeuwen H., Kim K., Doerge R.W., Michelmore R.W., St Clair D.A.  (2006Genomic survey of gene expression diversity in Arabidopsis thaliana. Genetics. 2006 172:1179-1189     
  • West MA, van Leeuwen H, Kozik A, Kliebenstein DJ, Doerge RW, St Clair DA, Michelmore RW. (2006High-density haplotyping with microarray-based expression and single feature polymorphism markers in Arabidopsis. Genome Res 2006 Jun;16(6):787-95.     
  • Bushman, B.S., Scholte, A.A., Cornish, K., Scott, D.J., Brichta, J.L., Vederas, J.C., Ochoa, O., Michelmore, R.W., Shintani, D., (2006Identification and characterization of natural rubber from two Lactuca species.  Phytochemistry 2006 67:2590-2596  
  • McHale, L., Tan, X., Koehl, P., Michelmore, R.W.  (2006Plant NBS-LRR proteins: adaptable guards. Genome Biology. 2006 7:212     Supplemental Data
  • Kuang, H., Ochoa, O.E., Nevo, E., Michelmore, R.W.  (2006The disease resistance gene Dm3 is infrequent in natural populations of Lactuca serriola due to deletions and frequent gene conversions at the RGC2 locus. Plant J. 2006 47(1):38-48        
    -- 2005 --
  • Bernal, A., Pan, Q., Pollack, J., Rose, L., Willets, N., Kozik, A., Michelmore, R.  (2005Functional dissection of the Pto resistance gene using DNA shuffling. J. Biol. Chem. 2005 280:23073-83     
  • Rose, L., Langley, C., Bernal, A., Michelmore, R.  (2005Natural variation in the Pto pathogen resistance gene within species of wild tomato (Lycopersicon):I. Functional analysis of Pto Alleles. Genetics. 2005 171:345-57     
  • Kim, K., West, M.A.L., Michelmore, R.W., St. Clair, D.A., and Doerge, R.W.  (2005Old methods for new ideas: genetic dissection of the determinants of gene expression levels.In: Genome Exploitation: Data Mining the Genome. 23rd Stadler Symposium Springer Science.  2005 pp 87 -107     
  • Wroblewski, T., Tomczak, A., and Michelmore, R. W.  (2005Optimization of Agrobacterium-mediated transient assays of gene expression in lettuce, tomato and Arabidopsis. Plant Biotechnology Journal.  2005 3:259-273     
  • Argyris J, Truco MJ, Ochoa O, Knapp SJ, Still DW, Lenssen GM, Schut JW, Michelmore RW, Bradford KJ. (2005Quantitative trait loci associated with seed and seedling traits in Lactuca. Theor Appl Genet. 2005 Nov;111(7):1365-1376.      
    -- 2004 --
  • Brown, S., Koike, S., Ochoa, O., Laemmlen, F. and Michelmore, R.W.  (2004Insensitivity to the fungicide, fosetyl-aluminum, in California isolates of lettuce downy mildew, Bremia lactucae. Plant Disease.  2004 46:1059-1069  
  • Kuang, H., Woo, S.-S., Meyers, B., Nevo, E. and Michelmore, R.W.  (2004Multiple genetic processes result in heterogeneous rates of evolution within the major cluster of disease resistance genes in lettuce. Plant Cell.  2004 16:2870-2894     
  • Rose L.E., Bittner-Eddy, P.D., Langley, C.H., Holub, E.B., Michelmore, R.W., and Beynon, J.L.  (2004The maintenance of extreme amino acid diversity at the resistance gene RPP13 in Arabidopsis thaliana. Genetics.  2004 166:1517-1527     
    -- 2003 --
  • Sicard, D., Legg, E.J., Brown, S., Babu, N., Ochoa, O., Michelmore, R.W.  (2003A genetic map of the lettuce downy mildew fungus, Bremia lactucae constructed from molecular markers and avirulence genes. Fungal Genetics and Biology. 2003 39:16-30     
  • Cannon S.B., Kozik A., Chan B., Michelmore R., Young N.D.  (2003DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology-discovery, and visualization. Genome Biology. 2003 4:R68     
  • Meyers BC, Kozik A, Griego A, Kuang H, Michelmore RW. (2003Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis. Plant Cell. 2003 15(4):809-34.        Supplemental Data
  • Michelmore, R.W.  (2003Impact zone: genomics and breeding for durable disease resistance. Current Opinion in Plant Biology. 2003 6:397-404     
  • Saltveit M.E., Ochoa, O., Reinaldo Campos-Vargas, R., and Richard Michelmore, R.W.  (2003Lines of lettuce selected for ethylene insensitivity at the seedling stage displayed variable responses to ethylene or wounding as mature heads. Postharvest Biology and Technology.  2003 27:277-283  
  • Moreno-Vaquez, S., Ochoa, O., Faber, N., Chao, S., Jacobs, J.M.E., Maisonneuve, B., Kesseli, R., Michelmore, R.W.  (2003SNP-based codominant markers for a recessive gene conferring resistance to corky root rot (Rhizomonas suberifaciens) in lettuce (Lactuca sativa). Genome. 2003 46:1059-1069     
    -- 2002 --
  • Shen, K.A., Chin, D.B., Arroyo-Garcia, R., Ochoa, O.E., Lavelle, D.O., Wroblewski, T., Meyers B.C., and Michelmore, R.W.  (2002Dm3 is one member of a large constitutively-expressed family of NBS-LRR encoding genes.  Mol Plant Microbe Interact. 2002 15:251-261     
  • Chang, J.H., Tai, Y.-S., Bernal, A.J., Lavelle, D.T., Staskawicz, B.J., Michelmore, R.W.  (2002Functional analysis of the Pto resistance gene family in tomato.  Mol Plant Microbe Interact. 2002 15:281-191  
  • Kozik A, Kochetkova E, Michelmore R. (2002GenomePixelizer - a visualization program for comparative genomics within and between species. Bioinformatics. 2002 18(2):335-6.     
  • Michelmore, R.W.  (2002Natural and artificial evolution of disease resistance genes.  Proc. 10th Int. Congr. Mol. Plant Microbe Interact.  2002 pp 23 - 29  
  • Mondragón-Palomino, M., Meyers, B.C., Michelmore, R.W., Gaut, B.S.  (2002Patterns of Positive Selection in the Complete NBS-LRR Gene Family of Arabidopsis thaliana.  Genome Res. 2002 12:1305-1315     
  • Meyers, B.C., Morgante, M, and Michelmore, R.W.  (2002TIR-X and TIT-NBS proteins: two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes. Plant Journal. 2002 32:77-92  
    -- 2001 --
  • Gedil, M.A., Slabaugh, M.B., Berry, S., Johnson, R., Michelmore, R.W., Miller, J., Gulya, T., Knapp, S.J.  (2001Candidate disease resistance genes in sunflower cloned using conserved nucleotide binding site motifs: genetic mapping and linkage to the downy mildew resistance gene Pl1. Genome. 2001 44:205-212     
  • Chang, J.H., Tobias, C.M., Staskawicz, B.J., Michelmore, R.W.  (2001Functional studies of the bacterial avirulence protein AvrPto by mutational analysis.  Mol Plant Microbe Interact. 2001 14:451-459        
  • Chin, D.B., Arroyo-Garcia, R., Ochoa, O., Kesseli, R.V., Lavelle, D.O., Michelmore, R.W.  (2001Recombination and spontaneous mutation at the major cluster of resistance genes in lettuce (Lactuca sativa). Genetics. 2001 157:831-849        
    -- 2000 --
  • Johnson, W.C., Jackson, L.E. Ochoa, O., van Wijk, R., Peleman, J., St.Clair, D.A., Michelmore, R.W.  (2000A shallow-rooted crop and its wild progenitor differ at loci determining root architecture and deep soil water extraction.  Theor. Appl. Genet. 2000 101:1066-1073     
  • Chang, J.H., Rathjen, J.P. Bernal, A.J., Staskawicz, B.J., Michelmore, R.W.  (2000AvrPto enhances growth and necrosis caused by Pseudomonas syringae pv.tomato in tomato lines lacking either Pto or Prf. Mol. Plant Microbe Interact. 2000 13:568-571        
  • Michelmore, R.W.  (2000Genomic approaches to plant disease resistance. Curr. Opin Curr. Opin. Plant Biol. 2000 3:125-131        
    -- 1999 --
  • Shiue, Y.-L., Bickel, L.A., Caetano, A.R., Millon, L.V., Clark, R., Eggleston, M.L., Michelmore, R.W., Bailey, E., Guerin, G., G (1999A syntenic map of the horse genome comprised of 240 microsatellite and RAPD markers Animal Genetics. 1999 30:1-9     
  • Rathjen, J.P., Chang, J.H., Staskawicz, B.S., Michelmore, R.W.  (1999Activated Pto mediates the AvrPto-dependent hypersensitive disease resistance response in N. benthamiana and tomato. EMBO J. 1999 18:3232-3240  
  • Irwin S.V., Kesseli R.V., Waycott W., Ryder E.J. Cho J.J., and Michelmore R.W.  (1999Identification of PCR-based markers flanking the recessive LMV resistance gene mo1 in an intraspecific cross of lettuce. Genome. 1999 42:982-986     
  • Waycott, W., Fort, S., Ryder, E.J., Michelmore, R.W.  (1999Mapping of twelve morphological genes relative to molecular markers in lettuce (Lactuca sativa L.) Heredity. 1999 82:245-251     
  • Sicard, D., Woo, S.-S., Arroyo-Garcia, R., Ochoa. O., Nguyen, D., Korol, A., Nevo, E., and Michelmore, R.W.  (1999Molecular diversity at the major cluster of disease resistance genes in cultivated and wild Lactuca spp.  Theor. Appl. Genet. 1999 99:405-418     
  • Meyers, B.C., Dickerman, A.W., Michelmore, R.W., Sivaramakrishnan, S., Sobral, B.W. and Young, N.D.  (1999Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily. Plant J. 1999 20:317-332     
  • Michelmore R.W.  (1999Structure, function and evolution of resistance gene clusters in plants, particularly the Pto and Dm3 loci.  Proc. 9th Int. Congr. Mol. Plant Microbe Interact. 1999 pp232-237  
    -- 1998 --
  • Michelmore, R.W. and Meyers, B.C.  (1998Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process Genome Research.  1998 8:1113-1130        
  • Witsenboer, H., Vogel, J., Michelmore, R.W.  (1998Identification, genetic localization, and allelic diversity of selectively amplified microsatellite polymorphic loci in lettuce and wild relatives (Lactuca spp.). Genome. 1998 40:923-936     
  • Meyers, B.C., Shen, K.A., Rohani, P., Gaut, B.S., Michelmore, R.W.  (1998Receptor-like genes in the major resistance locus of lettuce are subject to divergent selection Plant Cell. 1998 10:1833-1846        
  • Shen, K.A., Meyers, B.C., Islam-Faridi, M.N. Chin, D.B., Stelly, D.M., Michelmore, R.W.  (1998Resistance gene candidates identified using PCR with degenerate primers map to resistance genes clusters in lettuce.  Mol. Plant-Microbe Interact. 1998 11:815-823        
  • Meyers, B.C., Chin, D.B., Shen, K.A., Sivaramakrishnan, S., Lavelle, D.O., Zhang, Z., Michelmore, R.W.  (1998The major resistance gene cluster in lettuce is highly duplicated and spans several megabases Plant Cell. 1998 10:1817-1832        
    -- 1997 --
  • Okubara, P.A., Arroyo-Garcia, R., Shen, K.A., Mazier, M. Meyers, B.C., Ochoa, O., Kim, Shinje, S., Yang, C.-H., Michelmore, R.W. (1997A transgenic mutant of Lactuca sativa (lettuce) with a T-DNA tightly linked to the loss of downy mildew resistance.  Molec Plant Microbe Interact. 1997 10:970-977        
  • Fritjers, A.C.J., Zhang, Z., van Damme, M., Wang, G.-L., Ronald, P.C. and Michelmore, R.W.  (1997Construction of a bacterial artificial chromosome library containing large EcoRI and HindIII genomic fragments of lettuce.  Theor. Appl. Genet. 1997 94:390-399     
  • Kesseli, R. V. and Michelmore, R. W.  (1997The Compositae: systematically fascinating but specifically neglected.  In Genome Mapping in Plants, A.H. Paterson ed. R.G. Landes Co.  1997 pp179 -191  
    -- 1996 --
  • Hill, M., Witsenboer, H., Zabeau, M., Vos, P., Kesseli, R., Michelmore, R. W.  (1996AFLP fingerprinting as a tool for studying genetic relationships in Lactuca spp.  Theor. Appl. Genet. 1996 93:1202-1210  
  • Michelmore, R.W.  (1996Big news for plant transformation (Commentary) Nature Biotechnology. 1996 14:1653-1654     
  • Michelmore, R.W.  (1996Flood warning: resistance genes unleashed (News and Views) Nature Genetics. 1996 14:376-378     
  • Kesseli, R., H. Witsenboer, M. Hill, Y.-H. Zhang, M. Chase and R. Michelmore.  (1996Genome organization and the evolution of disease resistance genes in Lactuca spp. and the prospects for comparative mapping in the Compositae. In Proc. Int. Compositae Conf., Kew. 1994. Biology and Utilizati 1996 Vol 2. pp1-8  
  • Anderson, P. A., Okubara, P.A., Arroyo-Garcia, R., Meyers, B.C., Michelmore, R.W.  (1996Molecular analysis of irradiation-induced and spontaneous deletion mutants at a disease resistance locus in Lactuca sativa.  Mol. Gen. Genet. 1996 251:316-325     
  • Scofield, S.R. Tobias, C.M., Rathjen, J.P., Chang, J.H., Lavelle, D.T., Michelmore, R.W., and Staskawicz, B.J.  (1996Molecular basis of gene-for-gene specificity in bacterial speck disease of tomato. Science. 1996 274:2063-2065     
    -- 1995 --
  • Michelmore, R.W.  (1995Isolation of disease resistance genes from crop plants.  Curr. Opinions in Biotechnology. 1995 6:145-152  
  • Michelmore, R.  (1995Molecular approaches to manipulation of disease resistance genes.  Annu. Rev. Phytopathol. 1995 15:393-427  
  • Witsenboer, H., Kesseli, R.V., Fortin, M., Stangellini, M., Michelmore, R.W.  (1995Sources and genetic structure of a cluster of genes for resistance to three pathogens in lettuce.  Theor. Appl. Genet. 1995 91:178-188  
    -- 1994 --
  • Kesseli, R.V., I. Paran, and R.W. Michelmore  (1994Analysis of a detailed genetic linkage map of Lactuca sativa (lettuce) constructed from RFLP and RAPD markers. Genetics. 1994 136:1435-1446     
  • Michelmore, R.W., Anderson, P., Okubara, P., Witsenboer, H.  (1994Clusters of resistance genes in lettuce: map-based cloning in non-intensively studied species.  NATO ASI series, Vol. H 81, Pl. Mol. Biol. Eds. G. Coruzzi & 1994 pp501-509  
  • Michelmore, R.W., Kesseli, R.V., and Ryder, E.J.  (1994Genetic mapping in lettuce.  In: DNA Markers in Plants, eds, R.L. Phillips and I.K. Vasil. K 1994 pp223-239  
  • Robbins, M.A., Witsenboer, H., Michelmore, R.W. Laliberte, J.-F., and Fortin M.G.  (1994Genetic mapping of turnip mosaic virus resistance in Lactuca sativa.  Theor. Appl. Genet. 1994 89:583-589  
  • Okubara PA, Anderson PA, Ochoa OE, Michelmore RW. (1994Mutants of downy mildew resistance in Lactuca sativa (lettuce). Genetics.  1994 Jul;137(3):867-74.     
  • Maisoneuve, B., Anderson, P. and Michelmore, R.W.  (1994Rapid mapping of two genes for resistance to downy mildew derived from Lactuca serriola to existing clusters of resistance genes. Theor. Appl. Genet. 1994 89:96-104  
    -- 1993 --
  • Paran, I. and R.W. Michelmore  (1993Development of reliable PCR-based markers linked to downy mildew resistance genes in lettuce.  Theor. Appl. Genet. 1993 85:985-993  
  • Judelson, H.S., Dudler, R., Pieterse, C.M.J., Unkles, S.E. and Michelmore, R.W.  (1993Expression and antisense inhibition of transgenes in Phytophthora infestans is modulated by choice of promoter and position effects. Gene. 1993 133:63-69     
  • Yang, C.-H., J. Ellis, and R.W. Michelmore.  (1993Infrequent transposition of Ac in lettuce.  Pl. Mol. Biol. 1993 22:973-805     
  • Kesseli, R.V., Paran, I., Ochoa, O., Wang, W.-C., and Michelmore, R.W.  (1993Linkage map of lettuce (Lactuca sativa).  In: Genetic Maps, 6th Ed. S. J. O'Brien (ed.). Cold Spring Ha 1993 6: 229-233  
  • Michelmore, R.W., Anderson, P.A., Witsenboer, H., Kesseli, R.V., Paran, I., Francis, D.M. and Ochoa, O.  (1993Molecular markers and genome analysis in the manipulation of lettuce downy mildew.  In: Advances in Molecular Genetics of Plant Microbe Interactions 1993 2:517-523  
  • Kesseli, R.V., Witsenboer, H., Vandemark, G.J., Stangellini, M.E., and Michelmore, R.W.  (1993Recessive resistance to Plasmopara lactucae-radicis maps by bulked segregant analysis to a cluster of dominant resistance genes. Mol. Pl. Microbe Interact. 1993 6:722-728  
  • Yang, C.-H., Scofield, S., Caroll, B., Jones, J., Michelmore, R.W.  (1993Transposition of Ds in plants of lettuce.  Mol. Gen. Genet. 1993 241:389-398  
  • Francis, D.M. and R.W. Michelmore  (1993Two classes of chromosome-sized molecules are present in Bremia lactucae.  Exptal. Mycol. 1993 17:284-300  
    -- 1992 --
  • Paran, I., R.V. Kesseli, and R.W. Michelmore  (1992Recent amplification of triose phosphate isomerase related sequences in lettuce. Genome. 1992 35:627-635     
  • Judelson, H.S., B.M. Tyler, and R.W. Michelmore  (1992Regulatory sequences for expressing genes in oomycete fungi.  Mol. Gen. Genet. 1992 234:138-146     
  • Michelmore, R.W., R.V. Kesseli, D.M. Francis, I. Paran, M.G. Fortin, and C.-H. Yang  (1992Strategies for cloning plant disease resistance genes.  In: Molecular Plant Pathology - A Practical Approach. Ed. S. G 1992 Vol2, pp233-288  
  • Judelson, H.S. and R.W. Michelmore  (1992Temperature and genotype interactions in the expression of host resistance in lettuce downy mildew.  Physiol. Mol. Plant Pathol. 1992 40:233-245  
    -- 1991 --
  • Michelmore, R.W., I. Paran, and R.V. Kesseli  (1991Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations. Proc. Natl. Acad. Sci. 1991 88:9828-9832     
  • Paran, I., R.V. Kesseli, and R.W. Michelmore  (1991Identification of RFLP and RAPD markers linked to downy mildew resistance genes in lettuce using near-isogenic lines. Genome. 1991 34:1021-1027     
  • Vandemark, G.J., M.E. Stangellini, S.L. Rasmussen, and R.W. Michelmore. (1991Inheritance of resistance in lettuce to Plasmopara lactucae-radicis. Phytopathology. 1991 82:272-274.     
  • Schettini, T.M., E.J. Legg and R.W. Michelmore. (1991Insensitivity to metalaxyl in California populations of Bremia lactucae and resistance of California lettuce cultivars to downy mildew. Phytopathology 1991 81:64-70.  
  • Judelson, H.S., B. Tyler, and R.W. Michelmore  (1991Stable transformation of the potato late blight fungus, Phytophthora infestans.  Mol. Plant-Microbe Interact. 1991 4:602-607  
  • Judelson, H.S. and R.W. Michelmore. (1991Transient expression of genes in the oomycete, Phytophthora infestans, using regulatory sequences from Bremia lactucae. Curr. Genet 1991 19:453-459.  
  • Kesseli, R. V., O. Ochoa and R. W. Michelmore.  (1991Variation at RFLP loci in Lactuca spp. and the origin of cultivated lettuce (L. sativa).  Genome 1991 34: 430 - 436.   
    -- 1990 --
  • Francis, D.M., S.H. Hulbert and R.W. Michelmore. (1990Genome size and complexity of the obligate fungal pathogen, Bremia lactucae. Experimental Mycology 1990 14:299-309.  
  • Judelson, H.S. and R.W. Michelmore. (1990Highly abundant and stage specific mRNAs in the obligate pathogen, Bremia lactucae. Molecular Plant Microbe Interactions 1990 3:225-232.  
    -- 1989 --
  • Ilott, T. W., S. H. Hulbert and R. W. Michelmore. (1989Genetic analysis of the gene-for-gene interaction between lettuce (Lactuca sativa) and Bremia lactucae. Phytopathology 1989 79:888-897.  
  • Judelson, H. S. and R. W. Michelmore. (1989Strategies for cloning avirulence genes for Bremia lactucae. In: B. Staskawicz, P. Alquist and O. Yoder (eds.). Molecular Bio 1989 pp. 71-85.  
  • Judelson, H. S. and R. W. Michelmore. (1989Structure and expression of a gene encoding Hsp 70 from the Oomycete fungus, Bremia lactucae. Gene 1989 79:207-217.  
    -- 1988 --
  • Hulbert, S. H. and R. W. Michelmore. (1988DNA restriction fragment length polymorphism and somatic variation in the lettuce downy mildew fungus, Bremia lactucae. Molecular Plant-Microbe Interactions 1988 1:17-24.  
  • Hulbert, S. H., T. W. Ilott, E. J. Legg, S. E. Lincoln, E. S. Lander and R. W. Michelmore. (1988Genetic analysis of the fungus, Bremia lactucae, using restriction fragment length polymorphisms. Genetics 1988 120:947-958.  
  • Michelmore, R. W., S. H. Hulbert, T. Ilott and B. Farrara. (1988Genetics of downy mildews.  In: R. H. Williams and D. S. Ingram (eds.). Genetics of Pathoge 1988 Vol. 6, pp. 53-79.  
    -- 1987 --
  • Ilott, T. W., M. E. Durgan and R. W. Michelmore. (1987Genetics of virulence in California populations of Bremia lactucae (lettuce downy mildew). Phytopathology 1987 77:1381-1386.  
  • Michelmore, R. W. and S. H. Hulbert. (1987Molecular markers for the genetic analysis of phytopathogenic fungi. Annual Review of Phytopathology 1987 25:383-404.  
  • Michelmore, R. W., S. H. Hulbert, B. S. Landry and H. Leung. (1987Towards a molecular understanding of lettuce downy mildew. In: P. R. Day and G. J. Jellis (eds.). Genetics and Plant Pathog 1987 pp. 221-231.  
    -- 1984 --
  • Michelmore, R. W., J. M. Norwood, D. S. Ingram, I. R. Crute and P. Nicholson. (1984The inheritance of virulence in Bremia lactucae to match resistance factors 3, 4, 5, 6, 8, 9, 10 and 11 in lettuce (Lactuca sativa). Plant Pathology 1984 32:177-186.  
    -- 1983 --
  • Norwood, J. M., R. W. Michelmore, I. R. Crute and D. S. Ingram. (1983The inheritance of specific virulence of Bremia lactucae (Downy mildew) to match R-factors 1, 2, 4, 6 and 11 in lettuce (Lactuca sativa). Plant Pathology 1983 32:176-177.  
    -- 1982 --
  • Michelmore, R. W. and I. R. Crute. (1982A method for determining the virulence phenotype of isolates of Bremia lactucae isolates. Transactions of the British Mycological Society 1982 79:542-546.  
  • Michelmore, R. W. and D. S. Ingram. (1982Secondary homothallism in Bremia lactucae Regel. Transactions of the British Mycological Society 1982 78:1-9.  
  • Michelmore, R. W. and E. Sansome.  (1982The cytology of heterothallism and secondary homothallism in Bremia lactucae. Transactions of the British Mycological Society 1982 79:291-297.  
    -- 1981 --
  • Michelmore, R. W. and D. S. Ingram. (1981Recovery of progeny following sexual reproduction of Bremia lactucae. Transactions of the British Mycological Society 1981 77:131-137.  
  • Michelmore, R. W. (1981Sexual and asexual sporulation in the downy mildews. In: D. Spencer (ed.). The Downy Mildews. Academic Press. 1981 pp.165-181.  
  • Michelmore, R. W. and D. S. Ingram. (1981The origin of gametangia in the heterothallic isolates of Bremia lactucae Regel. Transactions of the British Mycological Society 1981 76:425-432.  
    -- 1980 --
  • Michelmore, R. W. and D. S. Ingram. (1980Heterothallism in Bremia lactucae Regel. Transactions of the British Mycological Society 1980 75:47-56.  
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